Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001882A_C01 KMC001882A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566678.1| expressed protein; protein id: At3g21200.1, sup... 202 4e-51
gb|AAM65419.1| unknown [Arabidopsis thaliana] 202 4e-51
ref|NP_566216.1| auxin-regulated protein; protein id: At3g03890.... 54 2e-06
ref|NP_683528.1| auxin-regulated protein; protein id: At3g03890.... 52 1e-05
gb|AAF61443.1|AF139187_1 root border cell-specific protein [Pisu... 51 1e-05
>ref|NP_566678.1| expressed protein; protein id: At3g21200.1, supported by cDNA:
39041., supported by cDNA: gi_17065155 [Arabidopsis
thaliana] gi|9280221|dbj|BAB01711.1|
gene_id:MXL8.5~unknown protein [Arabidopsis thaliana]
gi|17065156|gb|AAL32732.1| Unknown protein [Arabidopsis
thaliana] gi|27311937|gb|AAO00934.1| Unknown protein
[Arabidopsis thaliana]
Length = 317
Score = 202 bits (514), Expect = 4e-51
Identities = 94/135 (69%), Positives = 112/135 (82%)
Frame = -1
Query: 714 DRVLHLDDFQESGVWVTSLDYKNAQPDPLREFAEELVTEINTNNMEDVTRFCNVYVDLDF 535
DRVL ++DF E G+WV S DYKNA PDPLR+ AE++V +IN NNMED+ RFCNVYVDLDF
Sbjct: 172 DRVLQMEDFMEDGIWVASSDYKNASPDPLRDIAEDIVNQINANNMEDIFRFCNVYVDLDF 231
Query: 534 PVSQAKMVWVDRLGFDMRLSCPLQGTFEARIPFPREVTDEKGAKSSFNCMSQLAWEVEKN 355
VS+ KM+W+DRLGFD+R+ P +G ++ RIPFP EVTDEKGAKSSFN MSQLAWEVEK+
Sbjct: 232 VVSETKMIWMDRLGFDLRVWSP-RGVYDVRIPFPMEVTDEKGAKSSFNGMSQLAWEVEKS 290
Query: 354 FHPPDFQKVKQLKQV 310
+ P DF KVK LKQV
Sbjct: 291 YCPADFNKVKLLKQV 305
>gb|AAM65419.1| unknown [Arabidopsis thaliana]
Length = 317
Score = 202 bits (514), Expect = 4e-51
Identities = 94/135 (69%), Positives = 112/135 (82%)
Frame = -1
Query: 714 DRVLHLDDFQESGVWVTSLDYKNAQPDPLREFAEELVTEINTNNMEDVTRFCNVYVDLDF 535
DRVL ++DF E G+WV S DYKNA PDPLR+ AE++V +IN NNMED+ RFCNVYVDLDF
Sbjct: 172 DRVLQMEDFMEDGIWVASSDYKNASPDPLRDIAEDIVNQINANNMEDIFRFCNVYVDLDF 231
Query: 534 PVSQAKMVWVDRLGFDMRLSCPLQGTFEARIPFPREVTDEKGAKSSFNCMSQLAWEVEKN 355
VS+ KM+W+DRLGFD+R+ P +G ++ RIPFP EVTDEKGAKSSFN MSQLAWEVEK+
Sbjct: 232 VVSETKMIWMDRLGFDLRVWSP-RGVYDVRIPFPMEVTDEKGAKSSFNGMSQLAWEVEKS 290
Query: 354 FHPPDFQKVKQLKQV 310
+ P DF KVK LKQV
Sbjct: 291 YCPADFNKVKLLKQV 305
>ref|NP_566216.1| auxin-regulated protein; protein id: At3g03890.1, supported by
cDNA: 18355. [Arabidopsis thaliana]
gi|21553937|gb|AAM63018.1| unknown [Arabidopsis
thaliana]
Length = 321
Score = 54.3 bits (129), Expect = 2e-06
Identities = 33/96 (34%), Positives = 55/96 (56%), Gaps = 1/96 (1%)
Frame = -1
Query: 657 DYKNAQPDPLREFAEELVTEINTNNMEDVTRFCNVYVDLDFPVSQAKMVWVDRLGFDMRL 478
+Y+ A+ DP+ ++A+ + + +N ++ ED V+ PV A M+ +D LGF+++
Sbjct: 227 EYQAAKVDPIAQYAKPVTSHMNKDHEEDTKAI--VHNITSIPVESALMLDLDSLGFNVKA 284
Query: 477 SCPLQG-TFEARIPFPREVTDEKGAKSSFNCMSQLA 373
+ LQG TF+ R+PFPR D K K+ M Q A
Sbjct: 285 T--LQGNTFKLRVPFPRRAQDRKDVKTLIVEMLQAA 318
>ref|NP_683528.1| auxin-regulated protein; protein id: At3g03890.2, supported by
cDNA: gi_14190432, supported by cDNA: gi_15450554
[Arabidopsis thaliana]
gi|14190433|gb|AAK55697.1|AF378894_1 AT3g03890/F20H23_6
[Arabidopsis thaliana] gi|15450555|gb|AAK96455.1|
AT3g03890/F20H23_6 [Arabidopsis thaliana]
Length = 305
Score = 51.6 bits (122), Expect = 1e-05
Identities = 29/83 (34%), Positives = 50/83 (59%), Gaps = 1/83 (1%)
Frame = -1
Query: 657 DYKNAQPDPLREFAEELVTEINTNNMEDVTRFCNVYVDLDFPVSQAKMVWVDRLGFDMRL 478
+Y+ A+ DP+ ++A+ + + +N ++ ED V+ PV A M+ +D LGF+++
Sbjct: 227 EYQAAKVDPIAQYAKPVTSHMNKDHEEDTKAI--VHNITSIPVESALMLDLDSLGFNVKA 284
Query: 477 SCPLQG-TFEARIPFPREVTDEK 412
+ LQG TF+ R+PFPR D K
Sbjct: 285 T--LQGNTFKLRVPFPRRAQDRK 305
>gb|AAF61443.1|AF139187_1 root border cell-specific protein [Pisum sativum]
Length = 325
Score = 51.2 bits (121), Expect = 1e-05
Identities = 29/95 (30%), Positives = 53/95 (55%)
Frame = -1
Query: 657 DYKNAQPDPLREFAEELVTEINTNNMEDVTRFCNVYVDLDFPVSQAKMVWVDRLGFDMRL 478
++K+A+ DP+ +F++ + + +N ++ ED + + PV A ++ +DRLGF+++
Sbjct: 230 EFKSAKVDPISQFSKPVASHMNKDHGEDTKMIVQHWTSV--PVDFADILDLDRLGFNVKA 287
Query: 477 SCPLQGTFEARIPFPREVTDEKGAKSSFNCMSQLA 373
TF+ R+PFPR D K K+ M Q A
Sbjct: 288 GFK-GDTFKLRVPFPRPAEDRKDVKTLIVEMLQAA 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 612,023,378
Number of Sequences: 1393205
Number of extensions: 12784967
Number of successful extensions: 34755
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 33518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34743
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
