Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001871A_C01 KMC001871A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T45830 hypothetical protein F2K15.110 - Arabidopsis thalian... 84 4e-20
ref|NP_566916.1| expressed protein; protein id: At3g49250.1, sup... 84 4e-20
ref|NP_197816.1| putative protein; protein id: At5g24280.1 [Arab... 60 2e-08
dbj|BAB10393.1| contains similarity to En/Spm-like transposon pr... 39 0.070
ref|NP_702163.1| hypothetical protein, conserved [Plasmodium fal... 33 3.8
>pir||T45830 hypothetical protein F2K15.110 - Arabidopsis thaliana
gi|6723395|emb|CAB66404.1| hypothetical protein
[Arabidopsis thaliana]
Length = 422
Score = 84.3 bits (207), Expect(2) = 4e-20
Identities = 39/51 (76%), Positives = 47/51 (91%)
Frame = -2
Query: 589 VTASGYGLRETLFYGLFSRLQVYKTRDEMLLALPCITDGALSLDGGMIKKS 437
VT+ GYGLRETLFY LFSRLQVYKTR +M+ ALPCI+DGA+SLDGG+I+K+
Sbjct: 262 VTSYGYGLRETLFYNLFSRLQVYKTRADMISALPCISDGAVSLDGGIIRKT 312
Score = 35.4 bits (80), Expect(2) = 4e-20
Identities = 26/70 (37%), Positives = 36/70 (51%)
Frame = -3
Query: 453 G*LRKVGIFASW*PGKM*KVKFPLITGESDVPLDYIEAEDEVRQLKWINSKLAADIHREQ 274
G +RK GIF ++ V+F T + +Y EAE ++++LKW K DI REQ
Sbjct: 307 GIIRKTGIFNLGNRDEV-NVRFAKPTASRTMD-NYSEAEKKMKELKWKKEKTLEDIKREQ 364
Query: 273 QLLELRKGNF 244
L E NF
Sbjct: 365 VLREHAVFNF 374
>ref|NP_566916.1| expressed protein; protein id: At3g49250.1, supported by cDNA:
gi_15146293, supported by cDNA: gi_19699161 [Arabidopsis
thaliana] gi|15146294|gb|AAK83630.1| AT3g49250/F2K15_110
[Arabidopsis thaliana] gi|19699162|gb|AAL90947.1|
AT3g49250/F2K15_110 [Arabidopsis thaliana]
Length = 420
Score = 84.3 bits (207), Expect(2) = 4e-20
Identities = 39/51 (76%), Positives = 47/51 (91%)
Frame = -2
Query: 589 VTASGYGLRETLFYGLFSRLQVYKTRDEMLLALPCITDGALSLDGGMIKKS 437
VT+ GYGLRETLFY LFSRLQVYKTR +M+ ALPCI+DGA+SLDGG+I+K+
Sbjct: 283 VTSYGYGLRETLFYNLFSRLQVYKTRADMISALPCISDGAVSLDGGIIRKT 333
Score = 35.4 bits (80), Expect(2) = 4e-20
Identities = 26/70 (37%), Positives = 36/70 (51%)
Frame = -3
Query: 453 G*LRKVGIFASW*PGKM*KVKFPLITGESDVPLDYIEAEDEVRQLKWINSKLAADIHREQ 274
G +RK GIF ++ V+F T + +Y EAE ++++LKW K DI REQ
Sbjct: 328 GIIRKTGIFNLGNRDEV-NVRFAKPTASRTMD-NYSEAEKKMKELKWKKEKTLEDIKREQ 385
Query: 273 QLLELRKGNF 244
L E NF
Sbjct: 386 VLREHAVFNF 395
>ref|NP_197816.1| putative protein; protein id: At5g24280.1 [Arabidopsis thaliana]
gi|10177088|dbj|BAB10394.1|
emb|CAB66404.1~gene_id:MOP9.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 1634
Score = 60.5 bits (145), Expect = 2e-08
Identities = 31/61 (50%), Positives = 44/61 (71%), Gaps = 1/61 (1%)
Frame = -2
Query: 607 SNKLSFVTASGYGLRETLFYGLFSRLQVYKTRDEMLLALPCITDG-ALSLDGGMIKKSWY 431
S +L ++SGYGLRETLFYG+F LQVY+T + + ALP I G A+SLDG + +++ +
Sbjct: 1504 SEELDIQSSSGYGLRETLFYGVFRELQVYETAEHLEAALPHINGGDAVSLDGVIARENGF 1563
Query: 430 I 428
I
Sbjct: 1564 I 1564
>dbj|BAB10393.1| contains similarity to En/Spm-like transposon protein~gene_id:MOP9.9
[Arabidopsis thaliana]
Length = 1335
Score = 38.5 bits (88), Expect = 0.070
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = -2
Query: 601 KLSFVTASGYGLRETLFYGLFSRLQVYKTR 512
+L+ T SGYGLRETLFY LF LQ+ KTR
Sbjct: 1215 ELTVQTYSGYGLRETLFYNLFGNLQL-KTR 1243
>ref|NP_702163.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23497342|gb|AAN36887.1|AE014820_37 hypothetical
protein, conserved [Plasmodium falciparum 3D7]
Length = 744
Score = 32.7 bits (73), Expect = 3.8
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 157 LKRNSKKKLKVLTNKLSKFSLNNFSGLASEVALSKLQQLLLSMYISSKFRVYPLQLPHLI 336
L++N KK V+TNKL+ L NF + + L+ + LL + SK + P
Sbjct: 530 LRKNKKKCFTVVTNKLNTAKLENFYDIEIYILLTCPENNLLELKEFSKKIINP------- 582
Query: 337 FSFYIV*RYIRF 372
+ F+I YI +
Sbjct: 583 YEFFIAYNYIEW 594
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,248,441
Number of Sequences: 1393205
Number of extensions: 9907986
Number of successful extensions: 20014
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20013
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
