Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001870A_C01 KMC001870A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC10209.1| putative extracellular dermal glycoprotein [Cice... 107 6e-26
ref|NP_197411.1| dermal glycoprotein precursor -like protein; pr... 71 1e-16
gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibito... 83 3e-15
pir||T14329 dermal glycoprotein precursor, extracellular - carro... 70 9e-15
ref|NP_197412.1| dermal glycoprotein - like; protein id: At5g191... 66 8e-14
>emb|CAC10209.1| putative extracellular dermal glycoprotein [Cicer arietinum]
Length = 369
Score = 107 bits (268), Expect(2) = 6e-26
Identities = 55/80 (68%), Positives = 62/80 (76%)
Frame = -2
Query: 608 KRVAAVAPFEVCFDSTTIGNSVTGLVVPTIDLVLPGGVQWKILGANSMMMVKKNVACLAI 429
K+V +VAPFE CF+ST I NS+ P IDLVL GGVQW I G N M+ VKKNVACL
Sbjct: 264 KKVESVAPFEACFESTNIENSL-----PRIDLVLQGGVQWSIYGNNLMVNVKKNVACLGF 318
Query: 428 VDGGTKPRMSFAKAAIVIGG 369
VDGGT+PRMSFAKA+IVIGG
Sbjct: 319 VDGGTEPRMSFAKASIVIGG 338
Score = 31.6 bits (70), Expect(2) = 6e-26
Identities = 13/17 (76%), Positives = 17/17 (99%)
Frame = -1
Query: 324 AKLSFSSSLLLHNSTCS 274
+KLSFSSSLL+HN++CS
Sbjct: 353 SKLSFSSSLLVHNASCS 369
>ref|NP_197411.1| dermal glycoprotein precursor -like protein; protein id:
At5g19100.1 [Arabidopsis thaliana]
Length = 391
Score = 71.2 bits (173), Expect(3) = 1e-16
Identities = 40/79 (50%), Positives = 46/79 (57%)
Frame = -2
Query: 605 RVAAVAPFEVCFDSTTIGNSVTGLVVPTIDLVLPGGVQWKILGANSMMMVKKNVACLAIV 426
+ AV PF CF S G VP IDLVL GG +W+I G+NS++ V KNV CL V
Sbjct: 286 KAPAVKPFGACFYSNG------GRGVPVIDLVLSGGAKWRIYGSNSLVKVNKNVVCLGFV 339
Query: 425 DGGTKPRMSFAKAAIVIGG 369
DGG KP K IVIGG
Sbjct: 340 DGGVKP-----KYPIVIGG 353
Score = 31.2 bits (69), Expect(3) = 1e-16
Identities = 13/17 (76%), Positives = 16/17 (93%)
Frame = -1
Query: 324 AKLSFSSSLLLHNSTCS 274
+K SFSSSLLLHN++CS
Sbjct: 368 SKFSFSSSLLLHNTSCS 384
Score = 25.0 bits (53), Expect(3) = 1e-16
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 391 KLQLLLVGHQLVDNLLEFDL 332
K +++ G Q+ DNL+EFDL
Sbjct: 346 KYPIVIGGFQMEDNLVEFDL 365
>gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibitor protein
precursor [Lycopersicon esculentum]
Length = 438
Score = 82.8 bits (203), Expect = 3e-15
Identities = 45/83 (54%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -2
Query: 605 RVAAVAPFEVCFDSTTIGNSVTGLVVPTIDLVLP-GGVQWKILGANSMMMVKKNVACLAI 429
RVA VAPF VCFDS IG++ G VP+IDLVL V W I GANSM+ V +NV CL +
Sbjct: 325 RVAVVAPFRVCFDSRDIGSTRVGPAVPSIDLVLQNANVVWTIFGANSMVQVSENVLCLGV 384
Query: 428 VDGGTKPRMSFAKAAIVIGGTSI 360
+DGG A+ +IVIGG +I
Sbjct: 385 LDGGVN-----ARTSIVIGGHTI 402
>pir||T14329 dermal glycoprotein precursor, extracellular - carrot (fragment)
gi|285741|dbj|BAA03413.1| EDGP precursor [Daucus carota]
Length = 433
Score = 69.7 bits (169), Expect(2) = 9e-15
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = -2
Query: 605 RVAAVAPFEVCFDSTTIGNSVTGLVVPTIDLVLPG-GVQWKILGANSMMMVKKNVACLAI 429
RVA+VAPF CF + I ++ G VP+IDLVL V W I G+NSM+ + NV CL +
Sbjct: 322 RVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGV 381
Query: 428 VDGGTKPRMSFAKAAIVIGG 369
VDGG+ R S IVIGG
Sbjct: 382 VDGGSNLRTS-----IVIGG 396
Score = 32.0 bits (71), Expect(2) = 9e-15
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = -3
Query: 394 LKLQLLLVGHQLVDNLLEFDLASCQI 317
L+ +++ GHQL DNL++FDLA+ ++
Sbjct: 388 LRTSIVIGGHQLEDNLVQFDLATSRV 413
>ref|NP_197412.1| dermal glycoprotein - like; protein id: At5g19110.1 [Arabidopsis
thaliana]
Length = 405
Score = 66.2 bits (160), Expect(3) = 8e-14
Identities = 34/71 (47%), Positives = 48/71 (66%), Gaps = 4/71 (5%)
Frame = -2
Query: 605 RVAAVAPFEVCFDSTTIGNSVT-GLVVPTIDLVLPGG---VQWKILGANSMMMVKKNVAC 438
+V +VAPF+ CFDS T G ++T G VP I++ LPG V+W GAN+++ VK+ V C
Sbjct: 291 KVPSVAPFKHCFDSRTAGKNLTAGPNVPVIEIGLPGRIGEVKWGFYGANTVVKVKETVMC 350
Query: 437 LAIVDGGTKPR 405
LA +DGG P+
Sbjct: 351 LAFIDGGKTPK 361
Score = 27.7 bits (60), Expect(3) = 8e-14
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1
Query: 318 LSFSSSLLLHNSTCS 274
L+FS SLLLHN++CS
Sbjct: 385 LAFSESLLLHNTSCS 399
Score = 23.9 bits (50), Expect(3) = 8e-14
Identities = 10/19 (52%), Positives = 16/19 (83%), Gaps = 1/19 (5%)
Frame = -3
Query: 382 LLLVG-HQLVDNLLEFDLA 329
L+++G HQL D++LEFD +
Sbjct: 363 LMVIGTHQLQDHMLEFDFS 381
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,324,969
Number of Sequences: 1393205
Number of extensions: 11455411
Number of successful extensions: 29362
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 27879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29288
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
