Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001858A_C02 KMC001858A_c02
(729 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564426.1| disease resistance protein-related (LRR); prote... 264 1e-69
pir||G86459 Hypothetical 55.6 kDa protein - Arabidopsis thaliana... 264 1e-69
gb|AAM60932.1| putative disease resistance protein [Arabidopsis ... 263 1e-69
ref|NP_174624.1| leucine rich repeat protein family; protein id:... 219 3e-56
ref|NP_174625.1| leucine rich repeat protein family; protein id:... 216 2e-55
>ref|NP_564426.1| disease resistance protein-related (LRR); protein id: At1g33590.1,
supported by cDNA: 105146. [Arabidopsis thaliana]
Length = 477
Score = 264 bits (674), Expect = 1e-69
Identities = 125/175 (71%), Positives = 145/175 (82%)
Frame = -2
Query: 728 LNLAXDLLVDPFPEMNVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMKLD 549
L+L+ +LL DPFP +NVKGIESLDLS N FHLN IPKWVTSSPIIFSLKLA+CGIKM LD
Sbjct: 300 LDLSHNLLTDPFPVLNVKGIESLDLSYNQFHLNTIPKWVTSSPIIFSLKLAKCGIKMSLD 359
Query: 548 DWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFKYL 369
DWKPA+T++YDFIDLS NEI+GS +N TEYLV F +GNKL+FD +L F + L
Sbjct: 360 DWKPAQTFYYDFIDLSENEITGSPARFLNQTEYLVEFKAAGNKLRFDMGKLTFAKTLTTL 419
Query: 368 DLSHNLVFGKVPKSVAGLEKLNVSYNHLCGEIPKTKFPASAFVGNDCLCGAPLQP 204
D+S NLVFGKVP VAGL+ LNVS+NHLCG++P TKFPASAFVGNDCLCG+PL P
Sbjct: 420 DISRNLVFGKVPAMVAGLKTLNVSHNHLCGKLPVTKFPASAFVGNDCLCGSPLSP 474
Score = 37.0 bits (84), Expect = 0.28
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Frame = -2
Query: 728 LNLAXDLLVDPFP--EMNVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMK 555
L L +LL P N+K + L+L N IP S P + SL L+R G
Sbjct: 179 LKLGNNLLTGTIPLGVANLKLMSYLNLGGNRL-TGTIPDIFKSMPELRSLTLSRNGFSGN 237
Query: 554 LDDWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFK 375
L + F++L N++SG+ +++ + L
Sbjct: 238 LPPSIASLAPILRFLELGHNKLSGTIPNFLSNFKAL-----------------------D 274
Query: 374 YLDLSHNLVFGKVPKSVAGLEK---LNVSYNHLCGEIP 270
LDLS N G +PKS A L K L++S+N L P
Sbjct: 275 TLDLSKNRFSGVIPKSFANLTKIFNLDLSHNLLTDPFP 312
>pir||G86459 Hypothetical 55.6 kDa protein - Arabidopsis thaliana
gi|10998936|gb|AAG26075.1|AC069299_1 hypothetical
protein [Arabidopsis thaliana]
Length = 512
Score = 264 bits (674), Expect = 1e-69
Identities = 125/175 (71%), Positives = 145/175 (82%)
Frame = -2
Query: 728 LNLAXDLLVDPFPEMNVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMKLD 549
L+L+ +LL DPFP +NVKGIESLDLS N FHLN IPKWVTSSPIIFSLKLA+CGIKM LD
Sbjct: 335 LDLSHNLLTDPFPVLNVKGIESLDLSYNQFHLNTIPKWVTSSPIIFSLKLAKCGIKMSLD 394
Query: 548 DWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFKYL 369
DWKPA+T++YDFIDLS NEI+GS +N TEYLV F +GNKL+FD +L F + L
Sbjct: 395 DWKPAQTFYYDFIDLSENEITGSPARFLNQTEYLVEFKAAGNKLRFDMGKLTFAKTLTTL 454
Query: 368 DLSHNLVFGKVPKSVAGLEKLNVSYNHLCGEIPKTKFPASAFVGNDCLCGAPLQP 204
D+S NLVFGKVP VAGL+ LNVS+NHLCG++P TKFPASAFVGNDCLCG+PL P
Sbjct: 455 DISRNLVFGKVPAMVAGLKTLNVSHNHLCGKLPVTKFPASAFVGNDCLCGSPLSP 509
Score = 37.0 bits (84), Expect = 0.28
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Frame = -2
Query: 728 LNLAXDLLVDPFP--EMNVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMK 555
L L +LL P N+K + L+L N IP S P + SL L+R G
Sbjct: 214 LKLGNNLLTGTIPLGVANLKLMSYLNLGGNRL-TGTIPDIFKSMPELRSLTLSRNGFSGN 272
Query: 554 LDDWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFK 375
L + F++L N++SG+ +++ + L
Sbjct: 273 LPPSIASLAPILRFLELGHNKLSGTIPNFLSNFKAL-----------------------D 309
Query: 374 YLDLSHNLVFGKVPKSVAGLEK---LNVSYNHLCGEIP 270
LDLS N G +PKS A L K L++S+N L P
Sbjct: 310 TLDLSKNRFSGVIPKSFANLTKIFNLDLSHNLLTDPFP 347
>gb|AAM60932.1| putative disease resistance protein [Arabidopsis thaliana]
Length = 477
Score = 263 bits (673), Expect = 1e-69
Identities = 125/175 (71%), Positives = 145/175 (82%)
Frame = -2
Query: 728 LNLAXDLLVDPFPEMNVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMKLD 549
L+L+ +LL DPFP +NVKGIESLDLS N FHLN IPKWVTSSPIIFSLKLA+CGIKM LD
Sbjct: 300 LDLSHNLLTDPFPVLNVKGIESLDLSYNKFHLNTIPKWVTSSPIIFSLKLAKCGIKMSLD 359
Query: 548 DWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFKYL 369
DWKPA+T++YDFIDLS NEI+GS +N TEYLV F +GNKL+FD +L F + L
Sbjct: 360 DWKPAQTFYYDFIDLSENEITGSPARFLNQTEYLVEFKAAGNKLRFDMGKLTFAKTLTTL 419
Query: 368 DLSHNLVFGKVPKSVAGLEKLNVSYNHLCGEIPKTKFPASAFVGNDCLCGAPLQP 204
D+S NLVFGKVP VAGL+ LNVS+NHLCG++P TKFPASAFVGNDCLCG+PL P
Sbjct: 420 DISRNLVFGKVPAMVAGLKTLNVSHNHLCGKLPVTKFPASAFVGNDCLCGSPLSP 474
Score = 37.0 bits (84), Expect = 0.28
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Frame = -2
Query: 728 LNLAXDLLVDPFP--EMNVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMK 555
L L +LL P N+K + L+L N IP S P + SL L+R G
Sbjct: 179 LKLGNNLLTGTIPLGVANLKLMSYLNLGGNRL-TGTIPDIFKSMPELRSLTLSRNGFSGN 237
Query: 554 LDDWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFK 375
L + F++L N++SG+ +++ + L
Sbjct: 238 LPPSIASLAPILRFLELGHNKLSGTIPNFLSNFKAL-----------------------D 274
Query: 374 YLDLSHNLVFGKVPKSVAGLEK---LNVSYNHLCGEIP 270
LDLS N G +PKS A L K L++S+N L P
Sbjct: 275 TLDLSKNRFSGVIPKSFANLTKIFNLDLSHNLLTDPFP 312
>ref|NP_174624.1| leucine rich repeat protein family; protein id: At1g33600.1
[Arabidopsis thaliana] gi|25518789|pir||H86459
hypothetical protein T1E4.2 - Arabidopsis thaliana
gi|10998942|gb|AAG26081.1|AC069299_7 hypothetical
protein [Arabidopsis thaliana]
Length = 478
Score = 219 bits (558), Expect = 3e-56
Identities = 107/176 (60%), Positives = 127/176 (71%), Gaps = 1/176 (0%)
Frame = -2
Query: 728 LNLAXDLLVDPFPEM-NVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMKL 552
LNL+ + L P P M NV G+ +LDLS N FHL IPKWVTSSP ++SLKL +CGI M L
Sbjct: 300 LNLSHNFLTGPLPAMKNVDGLATLDLSYNQFHLKTIPKWVTSSPSMYSLKLVKCGINMSL 359
Query: 551 DDWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFKY 372
D+WKP Y +IDLS NEISGS N L F SGNKL+FD +L ER +
Sbjct: 360 DNWKPVRPNIYFYIDLSENEISGSLTWFFNLAHNLYEFQASGNKLRFDMGKLNLSERLES 419
Query: 371 LDLSHNLVFGKVPKSVAGLEKLNVSYNHLCGEIPKTKFPASAFVGNDCLCGAPLQP 204
LDLS NL+FGKVP +VA L+KLN+S+NHLCG++P TKFPASAFVGNDCLCG+PL P
Sbjct: 420 LDLSRNLIFGKVPMTVAKLQKLNLSHNHLCGKLPVTKFPASAFVGNDCLCGSPLSP 475
Score = 45.1 bits (105), Expect = 0.001
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Frame = -2
Query: 728 LNLAXDLLVDPFPE--MNVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMK 555
LNL +LL P N+K + SL+ NN IP S + SL L+R
Sbjct: 179 LNLGDNLLTGTIPLGLANLKILLSLNFGNNRLS-ETIPDIFKSMQKLQSLTLSRNKFSGN 237
Query: 554 LDDWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFK 375
L + +++DLS N +SG+ +++ + L
Sbjct: 238 LPPSIASLKPILNYLDLSQNNLSGTIPTFLSNFKVLDS---------------------- 275
Query: 374 YLDLSHNLVFGKVPKSVAGLEK---LNVSYNHLCGEIPKTK 261
LDLS N G VPKS+A + K LN+S+N L G +P K
Sbjct: 276 -LDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPAMK 315
>ref|NP_174625.1| leucine rich repeat protein family; protein id: At1g33610.1
[Arabidopsis thaliana] gi|25511729|pir||A86460 99.9K
hypothetical protein T1E4.10 - Arabidopsis thaliana
gi|10998940|gb|AAG26079.1|AC069299_5 hypothetical protein
[Arabidopsis thaliana]
Length = 907
Score = 216 bits (551), Expect = 2e-55
Identities = 104/176 (59%), Positives = 132/176 (74%), Gaps = 1/176 (0%)
Frame = -2
Query: 728 LNLAXDLLVDPFPEM-NVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMKL 552
L+L+ +LL PFP + ++ GIESLDLS N FHL IPKW+ SSP I+SLKLA+CG+K+ L
Sbjct: 729 LDLSHNLLTGPFPVLKSINGIESLDLSYNKFHLKTIPKWMISSPSIYSLKLAKCGLKISL 788
Query: 551 DDWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFKY 372
DDWK A TY+YD IDLS NEISGS ++ +YL+ F +GNKL+FD +L F +
Sbjct: 789 DDWKLAGTYYYDSIDLSENEISGSPAKFLSQXKYLMEFRAAGNKLRFDLGKLTFVRTLET 848
Query: 371 LDLSHNLVFGKVPKSVAGLEKLNVSYNHLCGEIPKTKFPASAFVGNDCLCGAPLQP 204
LDLS NL+FG+V + AGL+ +NVS NHLCG++P TKFPAS F GNDCLCG+PL P
Sbjct: 849 LDLSRNLIFGRVLATFAGLKTMNVSQNHLCGKLPVTKFPASXFAGNDCLCGSPLSP 904
Score = 199 bits (507), Expect = 3e-50
Identities = 99/164 (60%), Positives = 118/164 (71%)
Frame = -2
Query: 728 LNLAXDLLVDPFPEMNVKGIESLDLSNNMFHLNQIPKWVTSSPIIFSLKLARCGIKMKLD 549
L+L+ +LL FP++ V IE LDLS N F L IP+WVT P +F LKLA+CGIKM LD
Sbjct: 301 LDLSHNLLTGQFPDLTVNTIEYLDLSYNQFQLETIPQWVTLLPSVFLLKLAKCGIKMSLD 360
Query: 548 DWKPAETYFYDFIDLSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERLKFGERFKYL 369
DWKPAE +Y +IDLS NEISGS +N T YL+ F + NKL+FD L F K L
Sbjct: 361 DWKPAEPLYYHYIDLSKNEISGSLERFLNETRYLLEFRAAENKLRFDMGNLTFPRTLKTL 420
Query: 368 DLSHNLVFGKVPKSVAGLEKLNVSYNHLCGEIPKTKFPASAFVG 237
DLS NLVFGKVP +VAGL++LN+S NHLCGE+P TKFPASAF G
Sbjct: 421 DLSRNLVFGKVPVTVAGLQRLNLSQNHLCGELPTTKFPASAFAG 464
Score = 36.6 bits (83), Expect = 0.37
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -2
Query: 407 FERLKFGERFKYLDLSHNLVFGKVPKSVAGLE----KLNVSYNHLCGEIP 270
FE +K K+LDLS N +GK+P S+A L L VS N+L G IP
Sbjct: 219 FESMKL---LKFLDLSSNEFYGKLPLSIATLAPTLLALQVSQNNLSGAIP 265
Score = 33.1 bits (74), Expect = 4.1
Identities = 25/84 (29%), Positives = 38/84 (44%), Gaps = 5/84 (5%)
Frame = -2
Query: 506 LSGNEISGSAVGLVNSTEYLVGFWGSGNKLKFDFERL-KFGERFKYLDLSHNLVFGKVPK 330
+ GN +G + + L N+L + K + LDLS N FG++P
Sbjct: 610 IDGNMFTGHIPSSIANLTRLTWLNLGNNRLSGTIPNIFKSMKELNSLDLSRNGFFGRLPP 669
Query: 329 SVAGLEK----LNVSYNHLCGEIP 270
S+A L L++S N+L G IP
Sbjct: 670 SIASLAPTLYYLDLSQNNLSGTIP 693
Score = 32.0 bits (71), Expect = 9.2
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 5/87 (5%)
Frame = -2
Query: 515 FIDLSGNEISGSA-VGLVNSTEYLVGFWGSGNKLKFDFER-LKFGERFKYLDLSHNLVFG 342
F+DLS NE G + + L+ S N L + + + LDLS N G
Sbjct: 227 FLDLSSNEFYGKLPLSIATLAPTLLALQVSQNNLSGAIPNYISRFNKLEKLDLSKNRFSG 286
Query: 341 KVPKSVAGLEKLN---VSYNHLCGEIP 270
VP+ L +N +S+N L G+ P
Sbjct: 287 VVPQGFVNLTNINNLDLSHNLLTGQFP 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 656,336,238
Number of Sequences: 1393205
Number of extensions: 15119698
Number of successful extensions: 69850
Number of sequences better than 10.0: 730
Number of HSP's better than 10.0 without gapping: 51880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64447
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
