Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001853A_C01 KMC001853A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565574.1| WRKY family transcription factor; protein id: A... 171 7e-42
pir||C84638 probable WRKY-type DNA binding protein [imported] - ... 171 7e-42
ref|NP_680752.1| WRKY family transcription factor; protein id: A... 167 7e-41
ref|NP_567878.2| WRKY family transcription factor; protein id: A... 165 4e-40
pir||S72445 DNA-binding protein WRKY3 - parsley gi|1432056|gb|AA... 165 5e-40
>ref|NP_565574.1| WRKY family transcription factor; protein id: At2g24570.1,
supported by cDNA: gi_15991743 [Arabidopsis thaliana]
gi|15991744|gb|AAL13049.1|AF425836_1 WRKY transcription
factor 17 [Arabidopsis thaliana]
gi|20197975|gb|AAD23889.2| putative WRKY-type DNA
binding protein [Arabidopsis thaliana]
Length = 321
Score = 171 bits (433), Expect = 7e-42
Identities = 77/94 (81%), Positives = 83/94 (87%)
Frame = -1
Query: 600 SGNSKCHCTKKRKNRVKKTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCS 421
SGN KCHC K RKNR+K+TVRVPA+S+K ADIPPDEYSWRKYGQKPIKGSP+PRGYYKCS
Sbjct: 210 SGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCS 269
Query: 420 TVRGCPARKHVERATDDPTMLIVTYEGEQQARAS 319
T RGCPARKHVERA DD TMLIVTYEGE + S
Sbjct: 270 TFRGCPARKHVERALDDSTMLIVTYEGEHRHHQS 303
>pir||C84638 probable WRKY-type DNA binding protein [imported] - Arabidopsis
thaliana
Length = 410
Score = 171 bits (433), Expect = 7e-42
Identities = 77/94 (81%), Positives = 83/94 (87%)
Frame = -1
Query: 600 SGNSKCHCTKKRKNRVKKTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCS 421
SGN KCHC K RKNR+K+TVRVPA+S+K ADIPPDEYSWRKYGQKPIKGSP+PRGYYKCS
Sbjct: 210 SGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCS 269
Query: 420 TVRGCPARKHVERATDDPTMLIVTYEGEQQARAS 319
T RGCPARKHVERA DD TMLIVTYEGE + S
Sbjct: 270 TFRGCPARKHVERALDDSTMLIVTYEGEHRHHQS 303
>ref|NP_680752.1| WRKY family transcription factor; protein id: At4g31550.1,
supported by cDNA: 11953., supported by cDNA:
gi_16604572 [Arabidopsis thaliana]
gi|23297314|gb|AAN12939.1| putative DNA-binding protein
[Arabidopsis thaliana]
Length = 325
Score = 167 bits (424), Expect = 7e-41
Identities = 78/97 (80%), Positives = 85/97 (87%), Gaps = 2/97 (2%)
Frame = -1
Query: 603 VSGNS--KCHCTKKRKNRVKKTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYY 430
VSG++ KCHC K RKNR+K+TVRVPAIS+K ADIPPDEYSWRKYGQKPIKGSP+PRGYY
Sbjct: 210 VSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYY 269
Query: 429 KCSTVRGCPARKHVERATDDPTMLIVTYEGEQQARAS 319
KCST RGCPARKHVERA DDP MLIVTYEGE + S
Sbjct: 270 KCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQS 306
>ref|NP_567878.2| WRKY family transcription factor; protein id: At4g31550.2,
supported by cDNA: gi_15384214 [Arabidopsis thaliana]
gi|7484935|pir||T10685 DNA-binding protein WRKY3 homolog
F3L17.120 - Arabidopsis thaliana
gi|5262766|emb|CAB45914.1| putaive DNA-binding protein
[Arabidopsis thaliana] gi|7270058|emb|CAB79873.1|
putaive DNA-binding protein [Arabidopsis thaliana]
gi|15384215|gb|AAK96194.1|AF404856_1 WRKY transcription
factor 11 [Arabidopsis thaliana]
gi|24762195|gb|AAN64164.1| putative WRKY family
transcription factor [Arabidopsis thaliana]
Length = 324
Score = 165 bits (418), Expect = 4e-40
Identities = 79/97 (81%), Positives = 86/97 (88%), Gaps = 2/97 (2%)
Frame = -1
Query: 603 VSGNS--KCHCTKKRKNRVKKTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYY 430
VSG++ KCHC KKRKNR+K+TVRVPAIS+K ADIPPDEYSWRKYGQKPIKGSP+PRGYY
Sbjct: 210 VSGSAYGKCHC-KKRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYY 268
Query: 429 KCSTVRGCPARKHVERATDDPTMLIVTYEGEQQARAS 319
KCST RGCPARKHVERA DDP MLIVTYEGE + S
Sbjct: 269 KCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQS 305
>pir||S72445 DNA-binding protein WRKY3 - parsley gi|1432056|gb|AAC49528.1| WRKY3
[Petroselinum crispum]
Length = 341
Score = 165 bits (417), Expect = 5e-40
Identities = 75/101 (74%), Positives = 84/101 (82%)
Frame = -1
Query: 600 SGNSKCHCTKKRKNRVKKTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCS 421
S + +CHC KK+K RVKK VR+PAIS KT+DIPPD++SWRKYGQKPIKGSP+PRGYYKCS
Sbjct: 229 SSSGRCHCPKKKKLRVKKVVRMPAISMKTSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCS 288
Query: 420 TVRGCPARKHVERATDDPTMLIVTYEGEQQARASRPRCTRT 298
+VRGCPARKHVERA DDPTMLIVTYEGE S T T
Sbjct: 289 SVRGCPARKHVERAVDDPTMLIVTYEGEHNHSQSSNENTNT 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,391,541
Number of Sequences: 1393205
Number of extensions: 13579712
Number of successful extensions: 41316
Number of sequences better than 10.0: 228
Number of HSP's better than 10.0 without gapping: 39382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41143
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
