Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001852A_C01 KMC001852A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA61511.1| mitochondrial elongation factor Tu [Arabidopsis ... 163 2e-39
ref|NP_192202.1| mitochondrial elongation factor Tu; protein id:... 163 2e-39
gb|AAL55261.1|AF327062_1 translational elongation factor Tu [Ory... 155 5e-37
gb|AAG32661.1| translational elongation factor EF-TuM [Zea mays] 152 4e-36
ref|NP_207997.1| translation elongation factor EF-Tu (tufB) [Hel... 135 3e-31
>emb|CAA61511.1| mitochondrial elongation factor Tu [Arabidopsis thaliana]
Length = 471
Score = 163 bits (412), Expect = 2e-39
Identities = 79/87 (90%), Positives = 83/87 (94%)
Frame = -3
Query: 601 EIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGSVELPENVKMVMPGDNVTATFDLISPV 422
EIYVLTKDEGGRHTAFFSNY+PQFYLRTADITG VELPENVKMVMPGDNVTA F+LI PV
Sbjct: 385 EIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELIMPV 444
Query: 421 PLEPGQRFALREGGRTVGAGVVSKVVS 341
PLE GQRFALREGGRTVGAGVVSKV++
Sbjct: 445 PLETGQRFALREGGRTVGAGVVSKVMT 471
>ref|NP_192202.1| mitochondrial elongation factor Tu; protein id: At4g02930.1
[Arabidopsis thaliana] gi|25090254|sp|Q9ZT91|EFTM_ARATH
Elongation factor Tu, mitochondrial precursor
gi|7443411|pir||T01400 translation elongation factor
EF-Tu precursor, mitochondrial - Arabidopsis thaliana
gi|3924612|gb|AAC79113.1| mitochondrial elongation
factor Tu [Arabidopsis thaliana]
gi|4263511|gb|AAD15337.1| mitochondrial elongation
factor Tu [Arabidopsis thaliana]
gi|7269778|emb|CAB77778.1| mitochondrial elongation
factor Tu [Arabidopsis thaliana]
gi|22531166|gb|AAM97087.1| mitochondrial elongation
factor Tu [Arabidopsis thaliana]
Length = 454
Score = 163 bits (412), Expect = 2e-39
Identities = 79/87 (90%), Positives = 83/87 (94%)
Frame = -3
Query: 601 EIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGSVELPENVKMVMPGDNVTATFDLISPV 422
EIYVLTKDEGGRHTAFFSNY+PQFYLRTADITG VELPENVKMVMPGDNVTA F+LI PV
Sbjct: 368 EIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELIMPV 427
Query: 421 PLEPGQRFALREGGRTVGAGVVSKVVS 341
PLE GQRFALREGGRTVGAGVVSKV++
Sbjct: 428 PLETGQRFALREGGRTVGAGVVSKVMT 454
>gb|AAL55261.1|AF327062_1 translational elongation factor Tu [Oryza sativa]
gi|21685576|gb|AAM74563.1|AF303468_1 elongation factor
Tu [Oryza sativa] gi|27573344|gb|AAO20062.1|
translational elongation factor Tu [Oryza sativa
(japonica cultivar-group)]
Length = 453
Score = 155 bits (391), Expect = 5e-37
Identities = 75/87 (86%), Positives = 79/87 (90%)
Frame = -3
Query: 601 EIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGSVELPENVKMVMPGDNVTATFDLISPV 422
EIYVLTKDEGGRHTAF SNY PQFY RTAD+TG V LP+ V+MVMPGDNVTA F+LISPV
Sbjct: 367 EIYVLTKDEGGRHTAFLSNYSPQFYFRTADVTGKVVLPDGVEMVMPGDNVTAGFELISPV 426
Query: 421 PLEPGQRFALREGGRTVGAGVVSKVVS 341
PLEPGQRFALREGGRTVGAGVVSKV S
Sbjct: 427 PLEPGQRFALREGGRTVGAGVVSKVYS 453
>gb|AAG32661.1| translational elongation factor EF-TuM [Zea mays]
Length = 452
Score = 152 bits (383), Expect = 4e-36
Identities = 73/87 (83%), Positives = 79/87 (89%)
Frame = -3
Query: 601 EIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGSVELPENVKMVMPGDNVTATFDLISPV 422
EIYVLTKDEGGRHTAF +NY PQFY RTAD+TG VEL +KMV+PGDNVTA FDLISPV
Sbjct: 366 EIYVLTKDEGGRHTAFVTNYSPQFYFRTADVTGRVELLGEMKMVLPGDNVTANFDLISPV 425
Query: 421 PLEPGQRFALREGGRTVGAGVVSKVVS 341
PLEPGQRFA+REGGRTVGAGVVSKV+S
Sbjct: 426 PLEPGQRFAIREGGRTVGAGVVSKVLS 452
>ref|NP_207997.1| translation elongation factor EF-Tu (tufB) [Helicobacter pylori
26695] gi|2494256|sp|P56003|EFTU_HELPY Elongation factor
Tu (EF-Tu) gi|7443389|pir||E64670 translation elongation
factor EF-Tu - Helicobacter pylori (strain 26695)
gi|2314366|gb|AAD08250.1| translation elongation factor
EF-Tu (tufB) [Helicobacter pylori 26695]
Length = 399
Score = 135 bits (341), Expect = 3e-31
Identities = 62/86 (72%), Positives = 75/86 (87%)
Frame = -3
Query: 601 EIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGSVELPENVKMVMPGDNVTATFDLISPV 422
EIYVL+K+EGGRHT FF+NY+PQFY+RT D+TGS+ LPE V+MVMPGDNV T +LISPV
Sbjct: 313 EIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELISPV 372
Query: 421 PLEPGQRFALREGGRTVGAGVVSKVV 344
LE G +FA+REGGRTVGAGVVS ++
Sbjct: 373 ALELGTKFAIREGGRTVGAGVVSNII 398
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,005,653
Number of Sequences: 1393205
Number of extensions: 9725375
Number of successful extensions: 23972
Number of sequences better than 10.0: 552
Number of HSP's better than 10.0 without gapping: 23115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23863
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
