Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001850A_C01 KMC001850A_c01
(768 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB03155.1| gene_id:MQC3.30~unknown protein [Arabidopsis tha... 85 1e-15
ref|NP_187854.1| unknown protein; protein id: At3g12480.1 [Arabi... 85 1e-15
ref|NP_197450.1| putative protein; protein id: At5g19490.1 [Arab... 46 7e-04
gb|AAL73487.1|AF464904_1 repressor protein [Oryza sativa] 45 0.001
pir||T03744 myoD protein inhibitor - trichina gi|3057072|gb|AAC3... 43 0.006
>dbj|BAB03155.1| gene_id:MQC3.30~unknown protein [Arabidopsis thaliana]
gi|18087597|gb|AAL58929.1|AF462841_1 At3g12480/MQC3.32
[Arabidopsis thaliana] gi|23505853|gb|AAN28786.1|
At3g12480/MQC3.32 [Arabidopsis thaliana]
Length = 293
Score = 85.1 bits (209), Expect = 1e-15
Identities = 62/160 (38%), Positives = 82/160 (50%), Gaps = 11/160 (6%)
Frame = -2
Query: 752 TGSTGRGRGRGRGRGRGRGRTAVRETPHQAVEPEPCASVQQGIQHDTNTDMTIHDSSETK 573
+G GRGRGRGRGRG + A RE ++ +E E S Q + N M +SS +
Sbjct: 140 SGRGGRGRGRGRGRGGRAAKAAEREGLNREMEVEAANSGQP--PPEDNVKMHASESSPQE 197
Query: 572 ELPK--ENAAVPAESAEFH--------NLDLNANTNE-NEDKKASTTAKQEISEPPTESQ 426
+ K + A E + H + DLNA + + NE K A T + T+S
Sbjct: 198 DEKKGIDGTAASNEDTKQHLQSPKEGIDFDLNAESLDLNETKLAPATGTTTTTTAATDS- 256
Query: 425 HEEIPGWSLSDVDKMAIDSVQLANLGTHIEEDEEDYDEEG 306
EE GW + D+ KM D QLA+LG I+EDEEDYDEEG
Sbjct: 257 -EEYSGWPMMDISKM--DPAQLASLGKRIDEDEEDYDEEG 293
>ref|NP_187854.1| unknown protein; protein id: At3g12480.1 [Arabidopsis thaliana]
gi|12321975|gb|AAG51032.1|AC069474_31 unknown protein;
69004-67516 [Arabidopsis thaliana]
Length = 297
Score = 85.1 bits (209), Expect = 1e-15
Identities = 62/160 (38%), Positives = 82/160 (50%), Gaps = 11/160 (6%)
Frame = -2
Query: 752 TGSTGRGRGRGRGRGRGRGRTAVRETPHQAVEPEPCASVQQGIQHDTNTDMTIHDSSETK 573
+G GRGRGRGRGRG + A RE ++ +E E S Q + N M +SS +
Sbjct: 144 SGRGGRGRGRGRGRGGRAAKAAEREGLNREMEVEAANSGQP--PPEDNVKMHASESSPQE 201
Query: 572 ELPK--ENAAVPAESAEFH--------NLDLNANTNE-NEDKKASTTAKQEISEPPTESQ 426
+ K + A E + H + DLNA + + NE K A T + T+S
Sbjct: 202 DEKKGIDGTAASNEDTKQHLQSPKEGIDFDLNAESLDLNETKLAPATGTTTTTTAATDS- 260
Query: 425 HEEIPGWSLSDVDKMAIDSVQLANLGTHIEEDEEDYDEEG 306
EE GW + D+ KM D QLA+LG I+EDEEDYDEEG
Sbjct: 261 -EEYSGWPMMDISKM--DPAQLASLGKRIDEDEEDYDEEG 297
>ref|NP_197450.1| putative protein; protein id: At5g19490.1 [Arabidopsis thaliana]
Length = 236
Score = 45.8 bits (107), Expect = 7e-04
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 2/153 (1%)
Frame = -2
Query: 761 VSHTGSTGRGR-GRGRGRGRGRGRTAVRETPHQAVEPEPCASVQQGIQHDTNTDMTIHDS 585
V HT S GRGR GRGRGR GR + + + +E S + HD
Sbjct: 98 VKHT-SCGRGRRGRGRGRSSGRTGSGLSLKFEEDLED---GSPESSRTPSPENGSLSHDD 153
Query: 584 SETKELPKENAAVPAES-AEFHNLDLNANTNENEDKKASTTAKQEISEPPTESQHEEIPG 408
+ K++ N + S + N DLN +EN D E+Q E P
Sbjct: 154 TSWKKVASHNNHHSSNSEVKVRNFDLNVELDENGDNATW-----------LETQLERSPD 202
Query: 407 WSLSDVDKMAIDSVQLANLGTHIEEDEEDYDEE 309
+ L ++++M ID DEEDYDEE
Sbjct: 203 YPL-EINEMKIDPDDQQQASA---SDEEDYDEE 231
>gb|AAL73487.1|AF464904_1 repressor protein [Oryza sativa]
Length = 258
Score = 45.1 bits (105), Expect = 0.001
Identities = 39/146 (26%), Positives = 57/146 (38%), Gaps = 3/146 (2%)
Frame = -2
Query: 737 RGRGRGRGRGRGRGRTAVRETPHQAVEPEPCASVQQG--IQHDTNTDMTIHDSSETKELP 564
RGRGRGRGRGRGR T +E + E E QG + + TIH +
Sbjct: 135 RGRGRGRGRGRGRPPTKRKEVGYVQFEDESSMFADQGEALPGEETVPETIHGTESVPPST 194
Query: 563 KENAAVPAESAEFHNLDLNANTNENEDKKASTTAKQEISEPPTESQHEEIPGWSLSD-VD 387
A P+ +AE + +N+D + P W + D +
Sbjct: 195 HPPAEAPS-AAEIPAPNPKVEEAKNDDHQ---------------------PDWPMPDAIG 232
Query: 386 KMAIDSVQLANLGTHIEEDEEDYDEE 309
+ + +L ++ED EDYD E
Sbjct: 233 NIGVGPSGFGHLTVQVDED-EDYDNE 257
>pir||T03744 myoD protein inhibitor - trichina gi|3057072|gb|AAC38989.1| TsJ5
[Trichinella spiralis]
Length = 675
Score = 42.7 bits (99), Expect = 0.006
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Frame = -2
Query: 740 GRGRGRGRGRGRGRGRTAVRETPHQAVEPEPCASVQQGIQHDTN-TDMTIHDSSETKELP 564
GRG RG+ RG T++++ H A E A + +++++ D + D E +E+
Sbjct: 93 GRGISIPRGKSRGNLSTSLKKKVHFADPIEERAKILSQSENESDMDDFVLKDDLEDEEMF 152
Query: 563 KE-NAAVPAESAEFHNLDLNANTNENEDKKASTTAKQEISEPPTESQHEEIPGWSLSDVD 387
+E N+ E +E N ++ ++ED+K E E + +E +D D
Sbjct: 153 EEGNSDEDIEESE------NKDSEDDEDEKFLNMIDDEAEEDDDDEDKDE------ADDD 200
Query: 386 KMAIDSVQLANLGTHIEEDEEDYDEE 309
+ +DS ++ I+ED++D D++
Sbjct: 201 DLLLDSDEM-----DIDEDDDDEDDD 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 664,868,172
Number of Sequences: 1393205
Number of extensions: 14733921
Number of successful extensions: 93311
Number of sequences better than 10.0: 377
Number of HSP's better than 10.0 without gapping: 57966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83753
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
