Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001842A_C01 KMC001842A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563900.1| expressed protein; protein id: At1g12230.1, sup... 162 2e-39
gb|AAM66063.1| transaldolase ToTAL2 [Arabidopsis thaliana] 162 2e-39
dbj|BAC55687.1| putative transaldolase [Oryza sativa (japonica c... 151 5e-36
gb|AAG34725.1| transaldolase ToTAL2 [Lycopersicon esculentum] 148 4e-35
gb|AAL65638.1| transaldolase-like protein [Arabidopsis lyrata] 116 1e-25
>ref|NP_563900.1| expressed protein; protein id: At1g12230.1, supported by cDNA:
7590. [Arabidopsis thaliana] gi|25402713|pir||D86257
hypothetical protein [imported] - Arabidopsis thaliana
gi|10086511|gb|AAG12571.1|AC022522_4 Similar to
transaldolase [Arabidopsis thaliana]
gi|25083140|gb|AAN72047.1| expressed protein
[Arabidopsis thaliana]
Length = 405
Score = 162 bits (410), Expect = 2e-39
Identities = 80/111 (72%), Positives = 97/111 (87%), Gaps = 1/111 (0%)
Frame = -2
Query: 535 LMAAAVRYKQDLFSLLGVDYIKAPLKVLQSLNESVAFPD-EKYSFVRRLSPESASRYLFS 359
LMAAAVR KQDLFSLLGVDY+ APLKVLQSL +S A PD EKYSFVR+L+PE+A+ Y F+
Sbjct: 295 LMAAAVRNKQDLFSLLGVDYVIAPLKVLQSLKDSPAIPDDEKYSFVRKLTPETATHYHFT 354
Query: 358 DEELIKWDQTSLTEAMGPAAVQLLAAGLDGYADQATRVEEYFRKIWPPPNV 206
++EL+KWDQ SL +MGPA+V+LL+AG++GYA+QA RVEE F KIWPPPNV
Sbjct: 355 NKELVKWDQLSLASSMGPASVELLSAGVEGYANQAKRVEELFGKIWPPPNV 405
>gb|AAM66063.1| transaldolase ToTAL2 [Arabidopsis thaliana]
Length = 405
Score = 162 bits (410), Expect = 2e-39
Identities = 80/111 (72%), Positives = 97/111 (87%), Gaps = 1/111 (0%)
Frame = -2
Query: 535 LMAAAVRYKQDLFSLLGVDYIKAPLKVLQSLNESVAFPD-EKYSFVRRLSPESASRYLFS 359
LMAAAVR KQDLFSLLGVDY+ APLKVLQSL +S A PD EKYSFVR+L+PE+A+ Y F+
Sbjct: 295 LMAAAVRNKQDLFSLLGVDYVIAPLKVLQSLKDSPAIPDDEKYSFVRKLTPETATHYHFT 354
Query: 358 DEELIKWDQTSLTEAMGPAAVQLLAAGLDGYADQATRVEEYFRKIWPPPNV 206
++EL+KWDQ SL +MGPA+V+LL+AG++GYA+QA RVEE F KIWPPPNV
Sbjct: 355 NKELVKWDQLSLASSMGPASVELLSAGVEGYANQAKRVEELFGKIWPPPNV 405
>dbj|BAC55687.1| putative transaldolase [Oryza sativa (japonica cultivar-group)]
Length = 399
Score = 151 bits (381), Expect = 5e-36
Identities = 74/110 (67%), Positives = 87/110 (78%)
Frame = -2
Query: 535 LMAAAVRYKQDLFSLLGVDYIKAPLKVLQSLNESVAFPDEKYSFVRRLSPESASRYLFSD 356
LMAAA+R KQD+FSLLG+DYI APLK+LQSL ESV D KY +V RL+P Y F++
Sbjct: 290 LMAAAIRNKQDVFSLLGIDYIIAPLKILQSLEESVTDTDVKYGYVPRLTPALGKTYNFTE 349
Query: 355 EELIKWDQTSLTEAMGPAAVQLLAAGLDGYADQATRVEEYFRKIWPPPNV 206
EEL+KWDQ SL AMGPAA +LLA+GL+GY +QA RVEE F KIWPPPNV
Sbjct: 350 EELVKWDQLSLAAAMGPAAEELLASGLEGYVNQARRVEELFGKIWPPPNV 399
>gb|AAG34725.1| transaldolase ToTAL2 [Lycopersicon esculentum]
Length = 397
Score = 148 bits (374), Expect = 4e-35
Identities = 75/110 (68%), Positives = 86/110 (78%)
Frame = -2
Query: 535 LMAAAVRYKQDLFSLLGVDYIKAPLKVLQSLNESVAFPDEKYSFVRRLSPESASRYLFSD 356
LMAAAVR K D+F+LLG YI PLKVLQSL ESV DEKYSF RRLSP+SA+ + F+
Sbjct: 288 LMAAAVRNKPDVFNLLGGGYIITPLKVLQSLKESVTLLDEKYSFTRRLSPQSAAAFNFTQ 347
Query: 355 EELIKWDQTSLTEAMGPAAVQLLAAGLDGYADQATRVEEYFRKIWPPPNV 206
+EL KWDQ S + AMGPA+V+LL GLDGY +QA RVEE F KIWPPPNV
Sbjct: 348 DELQKWDQYSFSSAMGPASVELLTIGLDGYINQAKRVEELFGKIWPPPNV 397
>gb|AAL65638.1| transaldolase-like protein [Arabidopsis lyrata]
Length = 375
Score = 116 bits (291), Expect = 1e-25
Identities = 60/81 (74%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Frame = -2
Query: 535 LMAAAVRYKQDLFSLLGVDYIKAPLKVLQSLNESVAFP-DEKYSFVRRLSPESASRYLFS 359
LMAAAVR KQDLFSLLGVDY+ APLKVLQSL +S A P DEKYSFVR+L+PE+A+ Y F+
Sbjct: 295 LMAAAVRNKQDLFSLLGVDYVIAPLKVLQSLKDSPAIPGDEKYSFVRKLTPETATHYHFT 354
Query: 358 DEELIKWDQTSLTEAMGPAAV 296
++ELIKWDQ SL AMGPA+V
Sbjct: 355 NKELIKWDQLSLASAMGPASV 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,244,236
Number of Sequences: 1393205
Number of extensions: 9477888
Number of successful extensions: 26642
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 25937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26628
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
