Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001832A_C01 KMC001832A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_470164.1| similar to transport protein (Truncated, N-term... 35 0.99
gb|AAA93130.1| chitinase protein precursor 34 1.7
gb|AAG09437.1|AF181852_1 chitinase 92 [Aeromonas hydrophila] 34 1.7
emb|CAD58828.1| Chi1 protein [Aeromonas punctata] 34 1.7
emb|CAD24484.1| chitinase [Aeromonas punctata] 33 2.2
>ref|NP_470164.1| similar to transport protein (Truncated, N-terminal part) [Listeria
innocua] gi|25516321|pir||AF1535 transport protein
(Truncated, N-terminal part) homolog lin0822 [imported]
- Listeria innocua (strain Clip11262)
gi|16413273|emb|CAC96054.1| similar to transport protein
(Truncated, N-terminal part) [Listeria innocua]
Length = 253
Score = 34.7 bits (78), Expect = 0.99
Identities = 20/44 (45%), Positives = 27/44 (60%)
Frame = -1
Query: 357 ITFKVKFPLYLTRVRILVHRQKRYLLPPPLVTNLKIKDRELLFS 226
+TFK + YL ILV R +R+LLP LV L ++ R +LFS
Sbjct: 210 LTFKPHYQFYLEI--ILVQRSQRFLLPLELVLLLNVQQRLMLFS 251
>gb|AAA93130.1| chitinase protein precursor
Length = 865
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Frame = -3
Query: 337 PPIFNQGADLGAPAE-EVSSSSSASHEPEN 251
PP+ N G+DL A EV+ + SASH+PEN
Sbjct: 569 PPVANAGSDLSATGPAEVTLNGSASHDPEN 598
>gb|AAG09437.1|AF181852_1 chitinase 92 [Aeromonas hydrophila]
Length = 865
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Frame = -3
Query: 337 PPIFNQGADLGAPAE-EVSSSSSASHEPEN 251
PP+ N G+DL A EV+ + SASH+PEN
Sbjct: 569 PPVANAGSDLSATGPAEVTLNGSASHDPEN 598
>emb|CAD58828.1| Chi1 protein [Aeromonas punctata]
Length = 865
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Frame = -3
Query: 337 PPIFNQGADLGAPAE-EVSSSSSASHEPEN 251
PP+ N G+DL A EV+ + SASH+PEN
Sbjct: 569 PPVANAGSDLSATGPAEVTLNGSASHDPEN 598
>emb|CAD24484.1| chitinase [Aeromonas punctata]
Length = 865
Score = 33.5 bits (75), Expect = 2.2
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 337 PPIFNQGADLGAPAE-EVSSSSSASHEPEN 251
PP+ N G+DL A EV+ SASH+PEN
Sbjct: 569 PPVANAGSDLSATGPAEVTLKGSASHDPEN 598
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,472,720
Number of Sequences: 1393205
Number of extensions: 9727161
Number of successful extensions: 22835
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22825
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
