Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001823A_C02 KMC001823A_c02
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL55656.1|AF228915_1 GABA receptor rho-1 subunit [Takifugu r... 31 3.0
ref|NP_704959.1| hypothetical protein [Plasmodium falciparum 3D7... 31 4.0
ref|NP_702746.1| hypothetical protein [Plasmodium falciparum 3D7... 31 4.0
ref|NP_680818.1| ORF_ID:tlr0027~hypothetical protein [Thermosyne... 30 5.2
gb|EAA15751.1| Protein kinase domain, putative [Plasmodium yoeli... 30 5.2
>gb|AAL55656.1|AF228915_1 GABA receptor rho-1 subunit [Takifugu rubripes]
Length = 480
Score = 31.2 bits (69), Expect = 3.0
Identities = 18/54 (33%), Positives = 27/54 (49%)
Frame = +3
Query: 51 YKTINHKMYILDP*SLPQFTIRKLHQE*EIEFLTGSQLRHLEYIHISTRRKILF 212
+K N + D SL QF I+K H ++ F + + + YIH + RR I F
Sbjct: 228 WKKGNESLNTDDRISLSQFLIQKFHTTTKLAFYSSTGWYNRLYIHFTLRRHIFF 281
>ref|NP_704959.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615204|emb|CAD52194.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1341
Score = 30.8 bits (68), Expect = 4.0
Identities = 18/65 (27%), Positives = 34/65 (51%)
Frame = +2
Query: 53 QNH*PQDVHLGSLKSTTIYNQKTSSRIGD*VSNWVSTTSPRIHTHIYTKKNPIPNQELEI 232
QNH +H+ ++ T + + I +S+ + T+P H +T +N N++ +I
Sbjct: 483 QNHTKPTIHI---ENNTFIEKNDDNNI---ISSPKNETNPSTFCHNHTDQNKNTNEQADI 536
Query: 233 EKKKK 247
+KKKK
Sbjct: 537 KKKKK 541
>ref|NP_702746.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|6562728|emb|CAB62867.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2567
Score = 30.8 bits (68), Expect = 4.0
Identities = 30/110 (27%), Positives = 47/110 (42%)
Frame = +1
Query: 7 INQAMKKISFSITLITKPLTTRCTSWIPKVYHNLQSENFIKNRRLSF*LGLNYVT*NTYT 186
INQ K + I+K R S + K HN + +N KN+ + LGLN +
Sbjct: 886 INQTTKAYVYMYYDISKGYKERKYSLL-KYAHNKKKQNKNKNKNKN--LGLNVI------ 936
Query: 187 YLHEEKSYSQPGIGNRKKKKGTNKSEM*IFTSFSGGYVFQNSYHLKPWNH 336
H+ + + N KKKK K + + ++ ++ N YH NH
Sbjct: 937 --HKNQKKRNDKM-NEKKKKKKEKKKDDYYNIYNKYDMYNNIYHKNDINH 983
>ref|NP_680818.1| ORF_ID:tlr0027~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22293748|dbj|BAC07580.1|
ORF_ID:tlr0027~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 327
Score = 30.4 bits (67), Expect = 5.2
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Frame = +3
Query: 258 IRDVNLHQLFWWLCFPELLSFEALESPLLGEC---NPSVTVT 374
IRDV + Q++ W+C E S EAL+ L C PS+ VT
Sbjct: 240 IRDVEMFQIYLWVCLLE-QSLEALQRELFPLCLMLYPSLNVT 280
>gb|EAA15751.1| Protein kinase domain, putative [Plasmodium yoelii yoelii]
Length = 1675
Score = 30.4 bits (67), Expect = 5.2
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 143 VSNWVS---TTSPRIHTHIYTKKNPIPNQELEIEKKKKELINQRCK 271
V W S ++S I +I KKN + ++ EI KKKKE+ NQ K
Sbjct: 1068 VPKWSSNKTSSSSNITNNIVDKKNNMLVKKDEINKKKKEVFNQVAK 1113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,424,467
Number of Sequences: 1393205
Number of extensions: 8026042
Number of successful extensions: 21507
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21409
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
