Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001821A_C01 KMC001821A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187692.1| putative RING zinc finger protein; protein id: ... 45 0.001
ref|NP_567040.1| putative protein; protein id: At3g56585.1 [Arab... 38 0.13
gb|EAA00200.1| agCP9366 [Anopheles gambiae str. PEST] 32 7.0
gb|AAO53078.1| similar to Dictyostelium discoideum (Slime mold).... 32 9.1
>ref|NP_187692.1| putative RING zinc finger protein; protein id: At3g10810.1
[Arabidopsis thaliana]
gi|6630549|gb|AAF19568.1|AC011708_11 putative RING zinc
finger protein [Arabidopsis thaliana]
Length = 684
Score = 44.7 bits (104), Expect = 0.001
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 632 ARNSRAVPALSPLPNVAFAHAEPPPNNEPAPERMRMHSH-GPSLSTSSAGSLGSVKW-TF 459
A S VP +PLP+V FAHA PP EP +H P S+S+ L ++ W
Sbjct: 615 AAKSHIVPISAPLPHVVFAHAAQPPITEPREPHANEVAHPQPQSSSSAIEVLPAMPWIVL 674
Query: 458 LMFIVLVLH 432
LM IV LH
Sbjct: 675 LMLIVAWLH 683
>ref|NP_567040.1| putative protein; protein id: At3g56585.1 [Arabidopsis thaliana]
Length = 477
Score = 37.7 bits (86), Expect = 0.13
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 617 AVPALSPLPNVAFAHAEPPPNNEPAPERMRMHSHGPSLSTSSAGSL 480
A+P SPLP+V FAH PP + P E S P+ + + SL
Sbjct: 422 AIPVSSPLPHVVFAHIPPPSKSSPESEPTGEKSPSPAPTPCKSSSL 467
>gb|EAA00200.1| agCP9366 [Anopheles gambiae str. PEST]
Length = 409
Score = 32.0 bits (71), Expect = 7.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 535 RSGAGSLLGGGSA*AKATFGNGLKAGTA 618
++G GS GGGSA K + GNG+ GTA
Sbjct: 153 KAGGGSGSGGGSAGGKGSSGNGMANGTA 180
>gb|AAO53078.1| similar to Dictyostelium discoideum (Slime mold). Myosin I heavy
chain kinase (Fragment)
Length = 852
Score = 31.6 bits (70), Expect = 9.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 578 AHAEPPPNNEPAPERMRMHSHGPSLSTSSAGSLGS 474
A + PPPN +P P R+ ++G S SS S S
Sbjct: 21 AESSPPPNRKPPPPNKRVQTNGTSSLNSSGSSFVS 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,209,327
Number of Sequences: 1393205
Number of extensions: 12361948
Number of successful extensions: 35163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 32570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35034
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
