KMC001808A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC001808A_C01 KMC001808A_c01
gaattaaaataatttttatttaaaagtaaagtcacttacgttttaagccgaaacaAACAG
AGCCTTAATCCTATCTCAATTTTATTCAATTAAGATTTTGACTGAAGTAGGGAGATGAAG
AAATTCGTACACAATAACCACTATGCCTTAACAACTTTATTCAGTTCATAAACATGTAAA
ACAAAGGATCATAACAATGTCTAAGGATAGACTTCAAATAAGAGACCTAAAACCAGGAGA
AGGGTAAAGTATTTTGTAGTCTTTGAAGCCCGTGCTTCCTTGAATGAGATGCTTCCACTC
TTTCCCAGTTCTCTCTTTTCCATTAATCCCCATCATGATTAAATCCATACAAAGCTTGGT
TTGAGTCATAGCTTGGGTATCTTCCTTTTCATTTATTATTATATCCATGATAATCACTTT
TCCTCTATTCCCATTCCTTGAAACAGAGTCCTTACAGTTTTTCAGAATTTGTATGCAAAC
TTCATCTGACCAATCATGTAAAACCCACTTAAGCAGAACTGCATCAGCTTCAGGGCATAG
ATTTGAACATGTCCCCACCAACAAAGCTCAAAT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001808A_C01 KMC001808A_c01
         (573 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC58013.1| S-adenosyl-L-methionine: 2,7,4'-trihydroxyisofla...   117  1e-27
dbj|BAC58012.1| S-adenosyl-L-methionine: daidzein 7-0-methyltran...   117  2e-27
pir||T09254 isoflavone-7-O-methyltransferase (EC 2.1.1.-) 9 - al...   116  2e-26
gb|AAC49926.1| 7-O-methyltransferase [Medicago sativa]                114  6e-26
pir||T06786 6a-hydroxymaackiain methyltransferase (EC 2.1.1.-) -...   109  2e-25

>dbj|BAC58013.1| S-adenosyl-L-methionine: 2,7,4'-trihydroxyisoflavanone
           4'-O-methyltransferase [Lotus japonicus]
          Length = 365

 Score =  117 bits (292), Expect(2) = 1e-27
 Identities = 61/107 (57%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
 Frame = -1

Query: 534 PEADAVLLKWVLHDWSDEVCIQILKNCKDSVSRNGNRGKVIIMDIIINEKEDTQAMTQTK 355
           P ADAVLLKWVLHDW+DE+ ++ILKNCK+++S  G  GKVII+DI I+E  D + +T+ K
Sbjct: 257 PPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDETSDDRELTELK 316

Query: 354 LCMDLIMMGI-NGKERTGKEWKHLIQGSTGFKDYKILYPSPGFRSLI 217
           L  DL+M+ + NGKER  KEW+ LI    GF  YKI  P  GF+SLI
Sbjct: 317 LDYDLVMLTMFNGKEREKKEWEKLIY-DAGFSSYKIT-PICGFKSLI 361

 Score = 28.1 bits (61), Expect(2) = 1e-27
 Identities = 11/13 (84%), Positives = 13/13 (99%)
 Frame = -3

Query: 571 LSFVGGDMFKSMP 533
           L+FVGGDMFKS+P
Sbjct: 245 LNFVGGDMFKSVP 257

>dbj|BAC58012.1| S-adenosyl-L-methionine: daidzein 7-0-methyltransferase
           [Glycyrrhiza echinata]
          Length = 357

 Score =  117 bits (294), Expect(2) = 2e-27
 Identities = 58/106 (54%), Positives = 79/106 (73%)
 Frame = -1

Query: 534 PEADAVLLKWVLHDWSDEVCIQILKNCKDSVSRNGNRGKVIIMDIIINEKEDTQAMTQTK 355
           P+ADAVLLKW+LH+W+D  C +IL+ CK++VS +G +GKVII++++INE +D   +T TK
Sbjct: 250 PKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDEHEITGTK 309

Query: 354 LCMDLIMMGINGKERTGKEWKHLIQGSTGFKDYKILYPSPGFRSLI 217
           L MD+ M  +NGKER+ +EWK L     GF+DYKI  P  GF SLI
Sbjct: 310 LLMDVNMACLNGKERSEEEWKKLFI-EAGFRDYKI-SPLTGFLSLI 353

 Score = 26.6 bits (57), Expect(2) = 2e-27
 Identities = 10/13 (76%), Positives = 13/13 (99%)
 Frame = -3

Query: 571 LSFVGGDMFKSMP 533
           LS+VGGDMF+S+P
Sbjct: 238 LSYVGGDMFQSVP 250

>pir||T09254 isoflavone-7-O-methyltransferase (EC 2.1.1.-) 9 - alfalfa
           gi|2580584|gb|AAC49927.1| 7-O-methyltransferase
           [Medicago sativa]
          Length = 352

 Score =  116 bits (290), Expect(2) = 2e-26
 Identities = 58/106 (54%), Positives = 78/106 (72%)
 Frame = -1

Query: 534 PEADAVLLKWVLHDWSDEVCIQILKNCKDSVSRNGNRGKVIIMDIIINEKEDTQAMTQTK 355
           P ADAVLLK++LH+W+D+ C++ILK CK++V+ +G RGKV I+D++INEK+D   +TQ K
Sbjct: 245 PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEKKDENQVTQIK 304

Query: 354 LCMDLIMMGINGKERTGKEWKHLIQGSTGFKDYKILYPSPGFRSLI 217
           L MD+ M  +NGKER  +EWK L     GF+ YKI  P  GF SLI
Sbjct: 305 LLMDVNMACLNGKERNEEEWKKLFI-EAGFQHYKI-SPLTGFLSLI 348

 Score = 24.6 bits (52), Expect(2) = 2e-26
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 571 LSFVGGDMFKSMP 533
           L++VGGDMF S+P
Sbjct: 233 LTYVGGDMFTSIP 245

>gb|AAC49926.1| 7-O-methyltransferase [Medicago sativa]
          Length = 352

 Score =  114 bits (285), Expect(2) = 6e-26
 Identities = 57/106 (53%), Positives = 78/106 (72%)
 Frame = -1

Query: 534 PEADAVLLKWVLHDWSDEVCIQILKNCKDSVSRNGNRGKVIIMDIIINEKEDTQAMTQTK 355
           P ADAVLLK++LH+W+D+ C++ILK CK++V+ +G RGKV I+D++I+EK+D   +TQ K
Sbjct: 245 PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKKDENQVTQIK 304

Query: 354 LCMDLIMMGINGKERTGKEWKHLIQGSTGFKDYKILYPSPGFRSLI 217
           L MD+ M  +NGKER  +EWK L     GF+ YKI  P  GF SLI
Sbjct: 305 LLMDVNMACLNGKERNEEEWKKLFI-EAGFQHYKI-SPLTGFLSLI 348

 Score = 24.6 bits (52), Expect(2) = 6e-26
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 571 LSFVGGDMFKSMP 533
           L++VGGDMF S+P
Sbjct: 233 LTYVGGDMFTSIP 245

>pir||T06786 6a-hydroxymaackiain methyltransferase (EC 2.1.1.-) - garden pea
           gi|1568637|gb|AAC49856.1| 6a-hydroxymaackiain
           methyltransferase [Pisum sativum]
          Length = 360

 Score =  109 bits (272), Expect(2) = 2e-25
 Identities = 58/107 (54%), Positives = 77/107 (71%), Gaps = 1/107 (0%)
 Frame = -1

Query: 534 PEADAVLLKWVLHDWSDEVCIQILKNCKDSVSRNGNRGKVIIMDIIINEKEDTQAMTQTK 355
           P ADAVLLKWVLHDW+DE+ ++ILKN K+++S  G  GKVII+DI I+E  D + +T+ +
Sbjct: 252 PSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSDDRGLTELQ 311

Query: 354 LCMDLIMMGI-NGKERTGKEWKHLIQGSTGFKDYKILYPSPGFRSLI 217
           L  D++M+ +  GKERT KEW+ LI    GF  YKI  P  GF+SLI
Sbjct: 312 LEYDVVMLTMFLGKERTKKEWEKLIY-DAGFSRYKIT-PICGFKSLI 356

 Score = 28.1 bits (61), Expect(2) = 2e-25
 Identities = 11/13 (84%), Positives = 13/13 (99%)
 Frame = -3

Query: 571 LSFVGGDMFKSMP 533
           L+FVGGDMFKS+P
Sbjct: 240 LNFVGGDMFKSVP 252

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,294,039
Number of Sequences: 1393205
Number of extensions: 9140776
Number of successful extensions: 17760
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 17242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17677
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GENf086h09 BP062018 1 415
2 GENf058g09 BP060831 48 171
3 GNf077e08 BP073066 53 498
4 GNf021a07 BP068865 54 545
5 GNf022a12 BP068943 55 622
6 GNf022e04 BP068970 56 408
7 GNf088d01 BP073856 58 522
8 GNf045g10 BP070715 59 534
9 GNf054b08 BP071374 59 539
10 GNf017e01 BP068604 60 430
11 MWL012e09_f AV768779 60 614
12 GNf034f08 BP069858 60 581
13 GNf032a11 BP069667 60 541
14 GNf093g05 BP074271 60 538
15 GNf097d05 BP074551 60 535
16 MR073e10_f BP081622 60 500
17 MR030b12_f BP078291 60 642
18 MR082f08_f BP082328 62 159
19 MR039d08_f BP079018 62 527
20 MR067c08_f BP081141 63 577
21 MR087c09_f BP082676 67 507
22 MR069a03_f BP081265 67 532
23 MR038c04_f BP078928 68 602
24 GENf016h08 BP059056 68 512
25 GNf005g06 BP067756 69 558
26 MR020d10_f BP077519 73 493
27 MR070h04_f BP081414 73 470
28 MR019f01_f BP077447 73 504
29 MR053e03_f BP080086 73 549
30 MR044g09_f BP079435 73 532
31 GNf044c01 BP070589 84 562
32 MR009h04_f BP076662 131 583
33 MR053f09_f BP080100 131 638
34 GNf010d11 BP068087 131 629
35 GNf065d05 BP072192 145 611
36 MR005g04_f BP076340 145 605
37 GNf064e11 BP072131 148 593
38 MR034h06_f BP078659 148 585




Lotus japonicus
Kazusa DNA Research Institute