Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001801A_C01 KMC001801A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43785|GLN3_MEDSA Glutamine synthetase, nodule isozyme (Gluta... 214 4e-55
emb|CAA71316.1| glutamine synthetase [Medicago truncatula] 214 5e-55
gb|AAK49029.1| cytosolic glutamine synthetase [Populus x canescens] 214 5e-55
sp|P04771|GLN2_PHAVU Glutamine synthetase PR-2 (Gln isozyme alph... 211 6e-54
gb|AAB61597.1| glutamine synthetase [Hevea brasiliensis] 210 8e-54
>sp|Q43785|GLN3_MEDSA Glutamine synthetase, nodule isozyme (Glutamate--ammonia ligase)
gi|561674|gb|AAB41554.1| cytosolic glutamine synthetase
Length = 356
Score = 214 bits (546), Expect = 4e-55
Identities = 100/108 (92%), Positives = 106/108 (97%)
Frame = -2
Query: 543 HTNYSTKSMREDGGYEVIKKAIEKLGLKHKEHIAAYGTGNERRLTGKHETADIHTFSWGV 364
HTNYSTKSMREDGGYE+IKKAIEKLGL+HKEHIAAYG GNERRLTGKHET DI+TFSWGV
Sbjct: 249 HTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGV 308
Query: 363 ANRGASVRVGRETEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 220
ANRGASVRVGR+TEKDGKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct: 309 ANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356
>emb|CAA71316.1| glutamine synthetase [Medicago truncatula]
Length = 356
Score = 214 bits (545), Expect = 5e-55
Identities = 100/108 (92%), Positives = 107/108 (98%)
Frame = -2
Query: 543 HTNYSTKSMREDGGYEVIKKAIEKLGLKHKEHIAAYGTGNERRLTGKHETADIHTFSWGV 364
HTNYSTKSMRE+GGYE+IKKAIEKLGL+HKEHIAAYG GNERRLTGKHETADI+TFSWGV
Sbjct: 249 HTNYSTKSMRENGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGV 308
Query: 363 ANRGASVRVGRETEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 220
ANRGASVRVGR+TEKDGKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct: 309 ANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356
>gb|AAK49029.1| cytosolic glutamine synthetase [Populus x canescens]
Length = 356
Score = 214 bits (545), Expect = 5e-55
Identities = 100/108 (92%), Positives = 107/108 (98%)
Frame = -2
Query: 543 HTNYSTKSMREDGGYEVIKKAIEKLGLKHKEHIAAYGTGNERRLTGKHETADIHTFSWGV 364
HTNYSTKSMREDGGYEVIKKAIEKLGL+HKEHI+AYG GNERRLTG+HETADI+TFSWGV
Sbjct: 249 HTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHISAYGEGNERRLTGRHETADINTFSWGV 308
Query: 363 ANRGASVRVGRETEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 220
ANRGAS+RVGR+TEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct: 309 ANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
>sp|P04771|GLN2_PHAVU Glutamine synthetase PR-2 (Gln isozyme alpha) (Glutamate--ammonia
ligase) gi|68593|pir||AJFBQA glutamate-ammonia ligase
(EC 6.3.1.2) alpha, cytosolic - kidney bean
gi|21013|emb|CAA27632.1| glutamine synthetase subunit
(aa 1-356) [Phaseolus vulgaris] gi|225068|prf||1208270B
synthetase R2,Gln
Length = 356
Score = 211 bits (536), Expect = 6e-54
Identities = 99/108 (91%), Positives = 106/108 (97%)
Frame = -2
Query: 543 HTNYSTKSMREDGGYEVIKKAIEKLGLKHKEHIAAYGTGNERRLTGKHETADIHTFSWGV 364
H+NYSTKSMRE+GGYEVIKKAIEKLGL+HKEHIAAYG GNERRLTG+HETADI+TFSWGV
Sbjct: 249 HSNYSTKSMREEGGYEVIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGV 308
Query: 363 ANRGASVRVGRETEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 220
ANRG+SVRVGR+TEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct: 309 ANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
>gb|AAB61597.1| glutamine synthetase [Hevea brasiliensis]
Length = 356
Score = 210 bits (535), Expect = 8e-54
Identities = 99/108 (91%), Positives = 104/108 (95%)
Frame = -2
Query: 543 HTNYSTKSMREDGGYEVIKKAIEKLGLKHKEHIAAYGTGNERRLTGKHETADIHTFSWGV 364
HTNYSTKSMR DGGYEVIKKAIEKLGL+HKEHIAAYG GNERRLTG+HETADI+TF WGV
Sbjct: 249 HTNYSTKSMRHDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGV 308
Query: 363 ANRGASVRVGRETEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 220
ANRGAS+RVGR+TEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct: 309 ANRGASIRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,701,724
Number of Sequences: 1393205
Number of extensions: 10310024
Number of successful extensions: 27552
Number of sequences better than 10.0: 361
Number of HSP's better than 10.0 without gapping: 26775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27430
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
