Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001799A_C01 KMC001799A_c01
(357 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC21260.1| choline monooxygenase [Arabidopsis thaliana] 69 2e-11
sp|Q9SZR0|CHMO_ARATH Probable choline monooxygenase, chloroplast... 69 2e-11
ref|NP_194718.1| choline monooxygenase - like protein; protein i... 69 2e-11
sp|Q93XE1|CHMO_AMATR Choline monooxygenase, chloroplast precurso... 67 7e-11
sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplast precurso... 66 1e-10
>dbj|BAC21260.1| choline monooxygenase [Arabidopsis thaliana]
Length = 422
Score = 68.6 bits (166), Expect = 2e-11
Identities = 30/52 (57%), Positives = 43/52 (82%)
Frame = -3
Query: 355 SLQDSEKVQVEDIVLCEGVQKGLQSPAYFVGRYVPTVEQAMHHFHCLLYEDM 200
SL++S++VQ+ED++LCE VQ+GL+S AY GRY VE+ MHHFHCLL+ ++
Sbjct: 370 SLEESDRVQMEDVMLCESVQRGLESQAYDKGRYA-LVEKPMHHFHCLLHHNL 420
>sp|Q9SZR0|CHMO_ARATH Probable choline monooxygenase, chloroplast precursor
Length = 422
Score = 68.6 bits (166), Expect = 2e-11
Identities = 30/52 (57%), Positives = 43/52 (82%)
Frame = -3
Query: 355 SLQDSEKVQVEDIVLCEGVQKGLQSPAYFVGRYVPTVEQAMHHFHCLLYEDM 200
SL++S++VQ+ED++LCE VQ+GL+S AY GRY VE+ MHHFHCLL+ ++
Sbjct: 370 SLEESDRVQMEDVMLCESVQRGLESQAYDKGRYA-LVEKPMHHFHCLLHHNL 420
>ref|NP_194718.1| choline monooxygenase - like protein; protein id: At4g29890.1
[Arabidopsis thaliana] gi|7484869|pir||T08550 choline
monooxygenase (EC 1.1.3.-) precursor - Arabidopsis
thaliana gi|4914413|emb|CAB43664.1| choline
monooxygenase-like protein [Arabidopsis thaliana]
gi|7269888|emb|CAB79747.1| choline monooxygenase-like
protein [Arabidopsis thaliana]
Length = 426
Score = 68.6 bits (166), Expect = 2e-11
Identities = 30/52 (57%), Positives = 43/52 (82%)
Frame = -3
Query: 355 SLQDSEKVQVEDIVLCEGVQKGLQSPAYFVGRYVPTVEQAMHHFHCLLYEDM 200
SL++S++VQ+ED++LCE VQ+GL+S AY GRY VE+ MHHFHCLL+ ++
Sbjct: 374 SLEESDRVQMEDVMLCESVQRGLESQAYDKGRYA-LVEKPMHHFHCLLHHNL 424
>sp|Q93XE1|CHMO_AMATR Choline monooxygenase, chloroplast precursor
gi|15054919|gb|AAK82768.1|AF290974_1 choline
monooxygenase [Amaranthus tricolor]
Length = 442
Score = 66.6 bits (161), Expect = 7e-11
Identities = 27/52 (51%), Positives = 40/52 (76%)
Frame = -3
Query: 355 SLQDSEKVQVEDIVLCEGVQKGLQSPAYFVGRYVPTVEQAMHHFHCLLYEDM 200
S+ ++ VQ ED+VLCE VQ+GL++PAY GRYV +E+ +HHFHC L++ +
Sbjct: 390 SIMINDNVQKEDVVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWLHQTL 441
>sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplast precursor
gi|8571468|gb|AAF76895.1|AF270651_1 choline
monooxygenase [Atriplex hortensis]
Length = 438
Score = 66.2 bits (160), Expect = 1e-10
Identities = 27/46 (58%), Positives = 37/46 (79%)
Frame = -3
Query: 343 SEKVQVEDIVLCEGVQKGLQSPAYFVGRYVPTVEQAMHHFHCLLYE 206
++ VQ ED+VLCE VQKGL++PAY GRYV +E+ +HHFHC L++
Sbjct: 390 NDNVQKEDVVLCESVQKGLETPAYRSGRYVMPIEKGIHHFHCWLHQ 435
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,013,128
Number of Sequences: 1393205
Number of extensions: 6984442
Number of successful extensions: 17223
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17220
length of database: 448,689,247
effective HSP length: 94
effective length of database: 317,727,977
effective search space used: 7625471448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
