Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001797A_C01 KMC001797A_c01
(447 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00121327.1| hypothetical protein [Bifidobacterium longum ... 34 0.46
ref|XP_227645.1| similar to Amphoterin [Rattus norvegicus] 32 1.8
ref|XP_137436.1| similar to ORF1 [Mus musculus] 30 5.1
gb|AAC01711.1| polyketide synthase [Amycolatopsis mediterranei] 30 6.7
emb|CAD48605.1| coquillette [Paracentrotus lividus] 30 6.7
>ref|ZP_00121327.1| hypothetical protein [Bifidobacterium longum DJO10A]
Length = 612
Score = 33.9 bits (76), Expect = 0.46
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Frame = -2
Query: 425 RQAITSKKHKGRHSPGPRNRIEEPSLHIGDSKSKPVANDFSGSGYAEPETAISGNT*LKK 246
+QA+ K + G H + +E + G KP+ NDFS S A + AI G T K
Sbjct: 355 KQALLGKNYMGGHEV--KGDVEFSHVQFGYEPGKPIINDFSASVSAGQKVAIVGPTGAGK 412
Query: 245 -----------EI*GWNIRF--------KQF*LSDQFSFLLSLRYAKYYSLNQ*IAYGPV 123
EI G +I ++ + DQFS +L + ++ + +AY
Sbjct: 413 TTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKP 472
Query: 122 HQTTKLIKN 96
T K I++
Sbjct: 473 GVTNKQIED 481
>ref|XP_227645.1| similar to Amphoterin [Rattus norvegicus]
Length = 228
Score = 32.0 bits (71), Expect = 1.8
Identities = 20/65 (30%), Positives = 26/65 (39%), Gaps = 12/65 (18%)
Frame = +1
Query: 244 SFFNHVFPEIAVSGSAYPLP------------EKSFATGLLLESPMCNEGSSILLRGPGL 387
SF + P+ S AYPLP EK A P + +L GPG
Sbjct: 101 SFCSEYHPKSKASILAYPLPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVLCNGPGT 160
Query: 388 CLPLC 402
C+P+C
Sbjct: 161 CVPIC 165
>ref|XP_137436.1| similar to ORF1 [Mus musculus]
Length = 289
Score = 30.4 bits (67), Expect = 5.1
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 446 EEFLAMTRQAITSKKHKGRHSPGPRNRIEEPSLHIGDSKSKPVANDFSGSGYAEPETAIS 267
++ + M + + K+ G + P + I P H D P+ G+G A ETAIS
Sbjct: 85 KQVMEMNKIILDLKREVGHNKENPNSSIGGPVFHPIDDYEHPLLY-LPGTGIASQETAIS 143
Query: 266 G 264
G
Sbjct: 144 G 144
>gb|AAC01711.1| polyketide synthase [Amycolatopsis mediterranei]
Length = 5060
Score = 30.0 bits (66), Expect = 6.7
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 265 PEIAVSGSAYPLPEKSFATGLLLESP--MCNEGSSILLRGPG 384
P++AV G+A+ +P + ATG + E+P EG+ +L G G
Sbjct: 1314 PQLAVRGNAFSVPRLARATGEVPEAPAVFSPEGTVLLTGGTG 1355
>emb|CAD48605.1| coquillette [Paracentrotus lividus]
Length = 655
Score = 30.0 bits (66), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = -2
Query: 410 SKKHKGRHSPGPRNRIEEPSLHIGDSKS 327
+++ R S GP +R+ PSLH+G S S
Sbjct: 417 NERSDSRKSDGPSSRLSPPSLHLGSSAS 444
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,578,145
Number of Sequences: 1393205
Number of extensions: 7457207
Number of successful extensions: 16950
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16945
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
