Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001794A_C01 KMC001794A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL18925.1|AF429384_1 mevalonate kinase [Hevea brasiliensis] 187 8e-47
gb|AAD45421.1|L77688_1 mevalonate kinase [Arabidopsis thaliana] 137 1e-31
ref|NP_198097.1| mevalonate kinase; protein id: At5g27450.1, sup... 137 1e-31
gb|AAL31086.1|AC091749_15 putative mevalonate kinase [Oryza sativa] 110 1e-23
emb|CAA53059.1| ORF for viral-cellular fusion transcript [Hepati... 78 9e-14
>gb|AAL18925.1|AF429384_1 mevalonate kinase [Hevea brasiliensis]
Length = 386
Score = 187 bits (475), Expect = 8e-47
Identities = 90/108 (83%), Positives = 100/108 (92%)
Frame = -2
Query: 571 KSPTPDELSVSEKEEKIEELMEMNQGLLQCMGVSHATIETVLRTTLKYKLASKLTGAGGG 392
+SP PD++S++EKEEK+EELMEMNQGLLQCMGVSHA+IETVLRTTLKYKLASKLTGAGGG
Sbjct: 279 QSPAPDDVSITEKEEKLEELMEMNQGLLQCMGVSHASIETVLRTTLKYKLASKLTGAGGG 338
Query: 391 GCVLTLLPTLLSGTIIDKVITELESCGFQCIIAEIGGTGVEVKFGNSS 248
GCVLTLLPTLLSGT++DK I ELESCGFQC+IA IGG GVE FG SS
Sbjct: 339 GCVLTLLPTLLSGTVVDKAIAELESCGFQCLIAGIGGNGVEFCFGGSS 386
>gb|AAD45421.1|L77688_1 mevalonate kinase [Arabidopsis thaliana]
Length = 376
Score = 137 bits (345), Expect = 1e-31
Identities = 68/97 (70%), Positives = 81/97 (83%)
Frame = -2
Query: 556 DELSVSEKEEKIEELMEMNQGLLQCMGVSHATIETVLRTTLKYKLASKLTGAGGGGCVLT 377
DE SV+EKEE+I+ELMEMNQGLL MGVSH++IE V+ TT+K+KL SKLTGAGGGGCVLT
Sbjct: 281 DETSVTEKEERIKELMEMNQGLLLSMGVSHSSIEAVILTTVKHKLVSKLTGAGGGGCVLT 340
Query: 376 LLPTLLSGTIIDKVITELESCGFQCIIAEIGGTGVEV 266
LLPT GT++DKV+ ELES GFQC A IGG G ++
Sbjct: 341 LLPT---GTVVDKVVEELESSGFQCFTALIGGNGAQI 374
>ref|NP_198097.1| mevalonate kinase; protein id: At5g27450.1, supported by cDNA:
1045., supported by cDNA: gi_20260531 [Arabidopsis
thaliana] gi|1170660|sp|P46086|KIME_ARATH Mevalonate
kinase (MK) gi|541880|pir||S42088 mevalonate kinase (EC
2.7.1.36) - Arabidopsis thaliana
gi|456614|emb|CAA54820.1| mevalonate kinase [Arabidopsis
thaliana] gi|4883990|gb|AAD31719.1|AF141853_1 mevalonate
kinase [Arabidopsis thaliana] gi|20260532|gb|AAM13164.1|
mevalonate kinase [Arabidopsis thaliana]
gi|21536584|gb|AAM60916.1| mevalonate kinase
[Arabidopsis thaliana] gi|25083757|gb|AAN72115.1|
mevalonate kinase [Arabidopsis thaliana]
Length = 378
Score = 137 bits (345), Expect = 1e-31
Identities = 68/97 (70%), Positives = 81/97 (83%)
Frame = -2
Query: 556 DELSVSEKEEKIEELMEMNQGLLQCMGVSHATIETVLRTTLKYKLASKLTGAGGGGCVLT 377
DE SV+EKEE+I+ELMEMNQGLL MGVSH++IE V+ TT+K+KL SKLTGAGGGGCVLT
Sbjct: 283 DETSVTEKEERIKELMEMNQGLLLSMGVSHSSIEAVILTTVKHKLVSKLTGAGGGGCVLT 342
Query: 376 LLPTLLSGTIIDKVITELESCGFQCIIAEIGGTGVEV 266
LLPT GT++DKV+ ELES GFQC A IGG G ++
Sbjct: 343 LLPT---GTVVDKVVEELESSGFQCFTALIGGNGAQI 376
>gb|AAL31086.1|AC091749_15 putative mevalonate kinase [Oryza sativa]
Length = 367
Score = 110 bits (276), Expect = 1e-23
Identities = 51/64 (79%), Positives = 60/64 (93%)
Frame = -2
Query: 556 DELSVSEKEEKIEELMEMNQGLLQCMGVSHATIETVLRTTLKYKLASKLTGAGGGGCVLT 377
DE++++ KEEK+ ELMEMNQGLLQCMGVSH++IETVLRTTLK+ L SKLTGAGGGGCVLT
Sbjct: 292 DEIAITSKEEKLAELMEMNQGLLQCMGVSHSSIETVLRTTLKFNLVSKLTGAGGGGCVLT 351
Query: 376 LLPT 365
L+PT
Sbjct: 352 LIPT 355
>emb|CAA53059.1| ORF for viral-cellular fusion transcript [Hepatitis B virus]
Length = 557
Score = 77.8 bits (190), Expect = 9e-14
Identities = 42/107 (39%), Positives = 60/107 (55%)
Frame = -2
Query: 571 KSPTPDELSVSEKEEKIEELMEMNQGLLQCMGVSHATIETVLRTTLKYKLASKLTGAGGG 392
++P P++ V +EEL++MNQ L +GV HA+++ + + T L SKLTGAGGG
Sbjct: 445 EAPAPEQYLV------LEELIDMNQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGG 498
Query: 391 GCVLTLLPTLLSGTIIDKVITELESCGFQCIIAEIGGTGVEVKFGNS 251
GC +TLL L ++ L SCGF C+ IG GV + S
Sbjct: 499 GCGITLLKPGLEQPEVEATKQALTSCGFDCLETSIGAPGVSIHSATS 545
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,820,458
Number of Sequences: 1393205
Number of extensions: 10565342
Number of successful extensions: 31635
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 29799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31478
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
