Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001792A_C04 KMC001792A_c04
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC37356.1| putative membrane protein [Solanum tuberosum] 123 2e-27
emb|CAC37355.1| putative membrane protein [Solanum tuberosum] 123 2e-27
emb|CAC37358.1| putative membrane protein [Solanum tuberosum] 123 2e-27
emb|CAC37357.1| putative membrane protein [Solanum tuberosum] 122 3e-27
gb|AAN59773.1| Putative membrane protein [Oryza sativa (japonica... 119 4e-26
>emb|CAC37356.1| putative membrane protein [Solanum tuberosum]
Length = 402
Score = 123 bits (309), Expect = 2e-27
Identities = 61/113 (53%), Positives = 76/113 (66%)
Frame = -2
Query: 639 CLGTLQVFALLLRPNKDHKIRFYWNLYHWGIGYATIIISIVNIFKGFDAMEKSVGDRYDD 460
CLGTLQVFALLLRP DHK R YWN+YH GY II+SI+N+F+GFDA+ + +
Sbjct: 291 CLGTLQVFALLLRPKPDHKFRLYWNIYHHVTGYTVIILSIINVFEGFDAL-----NGQKN 345
Query: 459 WKNAYIGIIAALGGIAVLLEVYTWIIVLKRRKSENPDWHMEQMGSMVMCS*AH 301
WK AYIG+I LG IAVLLE TW IV+KR+K+ D + G+ S +H
Sbjct: 346 WKKAYIGVIIFLGAIAVLLEAITWFIVIKRKKTSVSDKYPHGNGTNGYASRSH 398
>emb|CAC37355.1| putative membrane protein [Solanum tuberosum]
Length = 400
Score = 123 bits (308), Expect = 2e-27
Identities = 55/95 (57%), Positives = 72/95 (74%)
Frame = -2
Query: 639 CLGTLQVFALLLRPNKDHKIRFYWNLYHWGIGYATIIISIVNIFKGFDAMEKSVGDRYDD 460
CLGTLQVFALLLRP DHK R YWN+YH +GYA I ++I N+F+GFDA+ + +
Sbjct: 288 CLGTLQVFALLLRPKPDHKYRLYWNIYHHAVGYAVISLAIANVFEGFDAL-----NGQKN 342
Query: 459 WKNAYIGIIAALGGIAVLLEVYTWIIVLKRRKSEN 355
WK AY G+I A+G IAVLLE +TW IV+KR+K+++
Sbjct: 343 WKRAYTGVIIAIGAIAVLLEAFTWFIVIKRKKTDS 377
>emb|CAC37358.1| putative membrane protein [Solanum tuberosum]
Length = 400
Score = 123 bits (308), Expect = 2e-27
Identities = 55/95 (57%), Positives = 72/95 (74%)
Frame = -2
Query: 639 CLGTLQVFALLLRPNKDHKIRFYWNLYHWGIGYATIIISIVNIFKGFDAMEKSVGDRYDD 460
CLGTLQVFALLLRP DHK R YWN+YH +GYA I ++I N+F+GFDA+ + +
Sbjct: 288 CLGTLQVFALLLRPKPDHKYRLYWNIYHHAVGYAVISLAITNVFQGFDAL-----NGQKN 342
Query: 459 WKNAYIGIIAALGGIAVLLEVYTWIIVLKRRKSEN 355
WK AY G+I A+G IAVLLE +TW IV+KR+K+++
Sbjct: 343 WKRAYTGVIIAIGAIAVLLEAFTWFIVIKRKKTDS 377
>emb|CAC37357.1| putative membrane protein [Solanum tuberosum]
Length = 400
Score = 122 bits (307), Expect = 3e-27
Identities = 55/94 (58%), Positives = 71/94 (75%)
Frame = -2
Query: 639 CLGTLQVFALLLRPNKDHKIRFYWNLYHWGIGYATIIISIVNIFKGFDAMEKSVGDRYDD 460
CLGTLQVFALLLRP DHK R YWN+YH +GYA I ++I N+F+GFDA+ + +
Sbjct: 288 CLGTLQVFALLLRPKPDHKYRLYWNIYHHAVGYAVISLAIANVFQGFDAL-----NGQKN 342
Query: 459 WKNAYIGIIAALGGIAVLLEVYTWIIVLKRRKSE 358
WK AY G+I A+G IAVLLE +TW IV+KR+K++
Sbjct: 343 WKRAYTGVIIAIGAIAVLLEAFTWFIVIKRKKTD 376
>gb|AAN59773.1| Putative membrane protein [Oryza sativa (japonica cultivar-group)]
Length = 384
Score = 119 bits (297), Expect = 4e-26
Identities = 53/94 (56%), Positives = 72/94 (76%)
Frame = -2
Query: 639 CLGTLQVFALLLRPNKDHKIRFYWNLYHWGIGYATIIISIVNIFKGFDAMEKSVGDRYDD 460
CL TLQVFALLLRP+K +K RFYWN+YH +GY+ I+++ VNIFKG D ++ + G
Sbjct: 281 CLATLQVFALLLRPDKKNKYRFYWNIYHHSVGYSAIVLAAVNIFKGLDILKPASG----- 335
Query: 459 WKNAYIGIIAALGGIAVLLEVYTWIIVLKRRKSE 358
WK +YI I+A L G+A+LLE TW+IVL+R+KS+
Sbjct: 336 WKRSYIAILATLAGVALLLEAITWVIVLRRKKSD 369
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,051,958
Number of Sequences: 1393205
Number of extensions: 14022084
Number of successful extensions: 31116
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 29917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31071
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
