Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001791A_C01 KMC001791A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA83471.1| Csf-3 [Cucumis sativus] 230 1e-59
sp|P35684|RL3_ORYSA 60S RIBOSOMAL PROTEIN L3 gi|481228|pir||S383... 219 3e-56
gb|AAK29057.1|AF346004_1 L3 ribosomal protein [Lolium perenne] 216 2e-55
emb|CAB65281.1| L3 Ribosomal protein [Medicago sativa subsp. x v... 208 4e-53
ref|NP_175009.1| ribosomal protein; protein id: At1g43170.1, sup... 207 9e-53
>dbj|BAA83471.1| Csf-3 [Cucumis sativus]
Length = 219
Score = 230 bits (587), Expect = 1e-59
Identities = 108/120 (90%), Positives = 117/120 (97%)
Frame = -3
Query: 634 AGQNGYHHRTELNKKIYRLGKAGDESHSAITEFDRTEKEITPMGGFPHYGIVKDDFLMIK 455
AGQNGYHHRTE+NKK+Y++GK G ESH+AITEFDRTEK+ITPMGGFPHYGIVK D+LMIK
Sbjct: 100 AGQNGYHHRTEMNKKVYKIGKTGQESHTAITEFDRTEKDITPMGGFPHYGIVKSDYLMIK 159
Query: 454 GGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQSTQEKQKFYGRLKA 275
GGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQ+TQEKQKF+GRLKA
Sbjct: 160 GGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 219
>sp|P35684|RL3_ORYSA 60S RIBOSOMAL PROTEIN L3 gi|481228|pir||S38359 ribosomal protein
L3.e, cytosolic - rice gi|303853|dbj|BAA02155.1|
ribosomal protein L3 [Oryza sativa (japonica
cultivar-group)]
Length = 389
Score = 219 bits (557), Expect = 3e-56
Identities = 100/120 (83%), Positives = 115/120 (95%)
Frame = -3
Query: 634 AGQNGYHHRTELNKKIYRLGKAGDESHSAITEFDRTEKEITPMGGFPHYGIVKDDFLMIK 455
AGQNGYHHRTE+NKK+Y++GK+G ESH+A TEFDRTEK+ITPMGGFPHYG+VK D+LMIK
Sbjct: 270 AGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIK 329
Query: 454 GGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQSTQEKQKFYGRLKA 275
G CVGPKKRV+TLRQSLLKQTSR+ALEEIKLKFIDTSSKFGHGRFQ+T EKQ+F+G+LKA
Sbjct: 330 GCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389
>gb|AAK29057.1|AF346004_1 L3 ribosomal protein [Lolium perenne]
Length = 220
Score = 216 bits (551), Expect = 2e-55
Identities = 99/120 (82%), Positives = 112/120 (92%)
Frame = -3
Query: 634 AGQNGYHHRTELNKKIYRLGKAGDESHSAITEFDRTEKEITPMGGFPHYGIVKDDFLMIK 455
AGQNGYHHRTE+NKK+Y++GK G E+H A TEFDRTEK+ITPMGGFPHYG+VK D+LMIK
Sbjct: 101 AGQNGYHHRTEMNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKGDYLMIK 160
Query: 454 GGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQSTQEKQKFYGRLKA 275
G CVGPKKRV+TLRQSLLKQTSR+ALEEIKLKF+D SSKFGHGRFQ+T EKQKFYG+LKA
Sbjct: 161 GCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDPSSKFGHGRFQTTDEKQKFYGKLKA 220
>emb|CAB65281.1| L3 Ribosomal protein [Medicago sativa subsp. x varia]
Length = 388
Score = 208 bits (530), Expect = 4e-53
Identities = 98/115 (85%), Positives = 107/115 (92%)
Frame = -3
Query: 634 AGQNGYHHRTELNKKIYRLGKAGDESHSAITEFDRTEKEITPMGGFPHYGIVKDDFLMIK 455
AGQNGYHHRTELNKKIY+LGK G+E+H A TEFDRTEK+ITPMGGFPHYGIVK+DFLMIK
Sbjct: 270 AGQNGYHHRTELNKKIYKLGKVGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDFLMIK 329
Query: 454 GGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQSTQEKQKFY 290
GGCVGPKKRVITLRQSLLKQTSR+ALE+IKLKFIDTS KFGHGRFQ+T E Q +
Sbjct: 330 GGCVGPKKRVITLRQSLLKQTSRLALEDIKLKFIDTSFKFGHGRFQTTSENQSLW 384
>ref|NP_175009.1| ribosomal protein; protein id: At1g43170.1, supported by cDNA:
14534., supported by cDNA: gi_11935190, supported by
cDNA: gi_13487799, supported by cDNA: gi_13605656,
supported by cDNA: gi_14517417, supported by cDNA:
gi_15450558, supported by cDNA: gi_15982760, supported
by cDNA: gi_166857 [Arabidopsis thaliana]
gi|27735225|sp|P17094|RL3A_ARATH 60S ribosomal protein
L3 gi|25295007|pir||E96498 L3 cytoplasmic ribosomal
protein [imported] - Arabidopsis thaliana
gi|3617741|gb|AAC36018.1| L3 cytoplasmic ribosomal
protein [Arabidopsis thaliana]
gi|11935191|gb|AAG42011.1|AF327421_1 putative ribosomal
protein [Arabidopsis thaliana]
gi|13487800|gb|AAK27726.1|AF361101_1 putative ribosomal
protein [Arabidopsis thaliana]
gi|13605657|gb|AAK32822.1|AF361809_1 At1g43170/F1I21_18
[Arabidopsis thaliana] gi|14517418|gb|AAK62599.1|
At1g43170/F1I21_18 [Arabidopsis thaliana]
gi|15450559|gb|AAK96457.1| At1g43170/F1I21_18
[Arabidopsis thaliana] gi|15982761|gb|AAL09721.1|
At1g43170/F1I21_18 [Arabidopsis thaliana]
Length = 389
Score = 207 bits (527), Expect = 9e-53
Identities = 96/118 (81%), Positives = 110/118 (92%)
Frame = -3
Query: 634 AGQNGYHHRTELNKKIYRLGKAGDESHSAITEFDRTEKEITPMGGFPHYGIVKDDFLMIK 455
AGQNGYHHRTELNKKIYRLGK G E+H+A+TE+DRTEK++TPMGGFPHYGIVKDD+LMIK
Sbjct: 270 AGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIK 329
Query: 454 GGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQSTQEKQKFYGRL 281
G CVGPKKRV+TLRQSLL QTSR+ALEEIKLKFIDT+S FGHGRFQ++ EK +FY R+
Sbjct: 330 GCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,545,670
Number of Sequences: 1393205
Number of extensions: 10676651
Number of successful extensions: 27966
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 27147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27861
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
