Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001789A_C01 KMC001789A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC82326.1| similarity to SCAMP37 [Pisum sativum] 189 3e-47
ref|NP_172584.1| secretory carrier membrane protein, putative; p... 187 1e-46
ref|NP_176320.1| secretory carrier membrane protein; protein id:... 186 3e-46
gb|AAF36688.1|AF225922_1 secretory carrier membrane protein [Ory... 179 3e-44
ref|NP_179680.1| putative secretory carrier-associated membrane ... 178 6e-44
>gb|AAC82326.1| similarity to SCAMP37 [Pisum sativum]
Length = 289
Score = 189 bits (480), Expect = 3e-47
Identities = 87/110 (79%), Positives = 102/110 (92%)
Frame = -1
Query: 654 LYRAFRNESALKFGWFFLFYMIHIGFCILAAVAPPIVFKGKSLTGILAAIDVLDNHALIG 475
LYRAFR +SA+KFGWFF+FY++HIGFCILAAVAPPIVFKGKSLTGIL+AIDV+ ++ L+G
Sbjct: 179 LYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKGKSLTGILSAIDVVGDYTLVG 238
Query: 474 IFYFIGFGLFCLETVISIWVLQQVYMYFRGSGKAAEMKREAARGALRAAI 325
IFYFIGFG FCLET+ISIWV+QQVYM+FRG GK AEMKREAA GA+ AA+
Sbjct: 239 IFYFIGFGFFCLETLISIWVIQQVYMHFRGGGKTAEMKREAALGAMGAAL 288
>ref|NP_172584.1| secretory carrier membrane protein, putative; protein id:
At1g11180.1 [Arabidopsis thaliana]
Length = 291
Score = 187 bits (475), Expect = 1e-46
Identities = 88/110 (80%), Positives = 100/110 (90%)
Frame = -1
Query: 654 LYRAFRNESALKFGWFFLFYMIHIGFCILAAVAPPIVFKGKSLTGILAAIDVLDNHALIG 475
LYRAFR++SA FGWFFLFYM+HI FC+ AAVAPPIVFKGKSL GIL AIDVL AL+G
Sbjct: 182 LYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQALVG 241
Query: 474 IFYFIGFGLFCLETVISIWVLQQVYMYFRGSGKAAEMKREAARGALRAAI 325
IFYFIGFGLFCLE+V+SIWV+QQVYMYFRGSGKA +M+R+AARGA+RAAI
Sbjct: 242 IFYFIGFGLFCLESVVSIWVIQQVYMYFRGSGKADDMRRDAARGAMRAAI 291
>ref|NP_176320.1| secretory carrier membrane protein; protein id: At1g61250.1,
supported by cDNA: 27197., supported by cDNA:
gi_15027862, supported by cDNA: gi_19310672, supported
by cDNA: gi_7109227 [Arabidopsis thaliana]
gi|7109228|gb|AAF36686.1|AF225920_1 secretory carrier
membrane protein [Arabidopsis thaliana]
gi|15027863|gb|AAK76462.1| putative secretory carrier
membrane protein [Arabidopsis thaliana]
gi|19310673|gb|AAL85067.1| putative secretory carrier
membrane protein [Arabidopsis thaliana]
gi|21555163|gb|AAM63793.1| secretory carrier membrane
protein [Arabidopsis thaliana]
Length = 289
Score = 186 bits (471), Expect = 3e-46
Identities = 85/110 (77%), Positives = 97/110 (87%)
Frame = -1
Query: 654 LYRAFRNESALKFGWFFLFYMIHIGFCILAAVAPPIVFKGKSLTGILAAIDVLDNHALIG 475
LYRAFR +SAL FGWFFLFYM+HI FC+ AAVAPP+VFKGKSL GIL AIDVL A++G
Sbjct: 180 LYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIVG 239
Query: 474 IFYFIGFGLFCLETVISIWVLQQVYMYFRGSGKAAEMKREAARGALRAAI 325
IFYFIGF FCLE+V+SIWV+QQVYMYFRGSGK +M+REAARGALRAA+
Sbjct: 240 IFYFIGFAFFCLESVVSIWVIQQVYMYFRGSGKQDQMRREAARGALRAAV 289
>gb|AAF36688.1|AF225922_1 secretory carrier membrane protein [Oryza sativa]
gi|15289879|dbj|BAB63575.1| secretory carrier membrane
protein [Oryza sativa (japonica cultivar-group)]
Length = 286
Score = 179 bits (454), Expect = 3e-44
Identities = 85/109 (77%), Positives = 98/109 (88%)
Frame = -1
Query: 654 LYRAFRNESALKFGWFFLFYMIHIGFCILAAVAPPIVFKGKSLTGILAAIDVLDNHALIG 475
LY A R ESALKFGWFFLFY+IHI FCI +AVAPP FKGKSL GIL AIDV+ N+A++G
Sbjct: 177 LYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDVIGNNAIVG 236
Query: 474 IFYFIGFGLFCLETVISIWVLQQVYMYFRGSGKAAEMKREAARGALRAA 328
IFYFIGFGLFCLE+++S+ V+QQVYMYFRGSGKAAEMKREAARGA+R+A
Sbjct: 237 IFYFIGFGLFCLESLLSVVVIQQVYMYFRGSGKAAEMKREAARGAMRSA 285
>ref|NP_179680.1| putative secretory carrier-associated membrane protein; protein id:
At2g20840.1 [Arabidopsis thaliana]
gi|25411996|pir||A84594 hypothetical protein At2g20840
[imported] - Arabidopsis thaliana
gi|4454464|gb|AAD20911.1| putative secretory
carrier-associated membrane protein [Arabidopsis
thaliana]
Length = 282
Score = 178 bits (451), Expect = 6e-44
Identities = 82/110 (74%), Positives = 95/110 (85%)
Frame = -1
Query: 654 LYRAFRNESALKFGWFFLFYMIHIGFCILAAVAPPIVFKGKSLTGILAAIDVLDNHALIG 475
LYRA R +SALKFGWFF Y+ HI FC+ AAVAPPI+FKGKSLTGIL AIDVL + L+G
Sbjct: 173 LYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVG 232
Query: 474 IFYFIGFGLFCLETVISIWVLQQVYMYFRGSGKAAEMKREAARGALRAAI 325
IFYFIGFG FCLE+++SIWV+QQVYMYFRGSGKAAEMK+EA R A+ AA+
Sbjct: 233 IFYFIGFGFFCLESLVSIWVIQQVYMYFRGSGKAAEMKQEATRRAMMAAL 282
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,172,233
Number of Sequences: 1393205
Number of extensions: 12657239
Number of successful extensions: 29372
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 28273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29329
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
