Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001788A_C02 KMC001788A_c02
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200507.1| cytokinin oxidase; protein id: At5g56970.1, sup... 78 8e-24
ref|NP_177678.2| cytokinin oxidase, putative; protein id: At1g75... 83 7e-23
gb|AAG30909.1|AF303982_1 cytokinin oxidase [Arabidopsis thaliana] 83 7e-23
pir||B96785 hypothetical protein F1B16.2 [imported] - Arabidopsi... 83 7e-23
gb|AAG30907.1|AF303980_1 cytokinin oxidase [Arabidopsis thaliana] 84 1e-22
>ref|NP_200507.1| cytokinin oxidase; protein id: At5g56970.1, supported by cDNA:
gi_11120509 [Arabidopsis thaliana]
gi|20138027|sp|Q9LTS3|CKX3_ARATH Cytokinin oxidase 3
precursor (CKO 3) gi|8777437|dbj|BAA97027.1| cytokinin
oxidase [Arabidopsis thaliana]
gi|11120510|gb|AAG30906.1|AF303979_1 cytokinin oxidase
[Arabidopsis thaliana]
Length = 523
Score = 77.8 bits (190), Expect(2) = 8e-24
Identities = 32/70 (45%), Positives = 48/70 (67%)
Frame = -3
Query: 417 GGDEVQKYQAQNQEILQFCKGAGIKIKEYLTGNKTHEEWVEHFGPKWKLWEDRKAEFDPK 238
G D + + +N EIL+FC+ A + + +YL + + E WV HFGP+W ++ +RK ++DPK
Sbjct: 448 GFDNWEAFDQENMEILKFCEDANMGVIQYLPYHSSQEGWVRHFGPRWNIFVERKYKYDPK 507
Query: 237 RILSPGQGIF 208
ILSPGQ IF
Sbjct: 508 MILSPGQNIF 517
Score = 53.9 bits (128), Expect(2) = 8e-24
Identities = 24/34 (70%), Positives = 31/34 (90%)
Frame = -2
Query: 541 SRISDFNEGVFKGIILKXNLTAGIVLVYPMNRNK 440
++IS F++GVFKGIIL+ N+T+G VLVYPMNRNK
Sbjct: 390 TQISKFDDGVFKGIILRNNITSGPVLVYPMNRNK 423
>ref|NP_177678.2| cytokinin oxidase, putative; protein id: At1g75450.1, supported by
cDNA: gi_11120515 [Arabidopsis thaliana]
Length = 540
Score = 83.2 bits (204), Expect(2) = 7e-23
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Frame = -3
Query: 444 ISLLXTAANGGDEVQKYQA---QNQEILQFCKGAGIKIKEYLTGNKTHEEWVEHFGPKWK 274
++LL +A G+E QK + QN+ IL+FC+ A I +K+YL + T EEWV HFG KW
Sbjct: 439 VALLRSALTDGEETQKLEYLKDQNRRILEFCEQAKINVKQYLPHHATQEEWVAHFGDKWD 498
Query: 273 LWEDRKAEFDPKRILSPGQGIF 208
+ KAEFDP+ IL+ GQ IF
Sbjct: 499 RFRSLKAEFDPRHILATGQRIF 520
Score = 45.4 bits (106), Expect(2) = 7e-23
Identities = 21/34 (61%), Positives = 29/34 (84%)
Frame = -2
Query: 541 SRISDFNEGVFKGIILKXNLTAGIVLVYPMNRNK 440
SRISDF++GVFKGI+ N T+G +L+YPMN++K
Sbjct: 390 SRISDFDKGVFKGIL--GNKTSGPILIYPMNKDK 421
>gb|AAG30909.1|AF303982_1 cytokinin oxidase [Arabidopsis thaliana]
Length = 540
Score = 83.2 bits (204), Expect(2) = 7e-23
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Frame = -3
Query: 444 ISLLXTAANGGDEVQKYQA---QNQEILQFCKGAGIKIKEYLTGNKTHEEWVEHFGPKWK 274
++LL +A G+E QK + QN+ IL+FC+ A I +K+YL + T EEWV HFG KW
Sbjct: 439 VALLRSALTDGEETQKLEYLKDQNRRILEFCEQAKINVKQYLPHHATQEEWVAHFGDKWD 498
Query: 273 LWEDRKAEFDPKRILSPGQGIF 208
+ KAEFDP+ IL+ GQ IF
Sbjct: 499 RFRSLKAEFDPRHILATGQRIF 520
Score = 45.4 bits (106), Expect(2) = 7e-23
Identities = 21/34 (61%), Positives = 29/34 (84%)
Frame = -2
Query: 541 SRISDFNEGVFKGIILKXNLTAGIVLVYPMNRNK 440
SRISDF++GVFKGI+ N T+G +L+YPMN++K
Sbjct: 390 SRISDFDKGVFKGIL--GNKTSGPILIYPMNKDK 421
>pir||B96785 hypothetical protein F1B16.2 [imported] - Arabidopsis thaliana
gi|10120443|gb|AAG13068.1|AC023754_6 Similar to
cytokinin oxidase [Arabidopsis thaliana]
Length = 512
Score = 83.2 bits (204), Expect(2) = 7e-23
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Frame = -3
Query: 444 ISLLXTAANGGDEVQKYQA---QNQEILQFCKGAGIKIKEYLTGNKTHEEWVEHFGPKWK 274
++LL +A G+E QK + QN+ IL+FC+ A I +K+YL + T EEWV HFG KW
Sbjct: 411 VALLRSALTDGEETQKLEYLKDQNRRILEFCEQAKINVKQYLPHHATQEEWVAHFGDKWD 470
Query: 273 LWEDRKAEFDPKRILSPGQGIF 208
+ KAEFDP+ IL+ GQ IF
Sbjct: 471 RFRSLKAEFDPRHILATGQRIF 492
Score = 45.4 bits (106), Expect(2) = 7e-23
Identities = 21/34 (61%), Positives = 29/34 (84%)
Frame = -2
Query: 541 SRISDFNEGVFKGIILKXNLTAGIVLVYPMNRNK 440
SRISDF++GVFKGI+ N T+G +L+YPMN++K
Sbjct: 362 SRISDFDKGVFKGIL--GNKTSGPILIYPMNKDK 393
>gb|AAG30907.1|AF303980_1 cytokinin oxidase [Arabidopsis thaliana]
Length = 524
Score = 84.0 bits (206), Expect(2) = 1e-22
Identities = 38/76 (50%), Positives = 51/76 (67%)
Frame = -3
Query: 435 LXTAANGGDEVQKYQAQNQEILQFCKGAGIKIKEYLTGNKTHEEWVEHFGPKWKLWEDRK 256
L +A G Q+ + N +++QFC+ +GIKIKEYL E+WV+HFGPKW + +K
Sbjct: 448 LLQSAGGSQNWQELENLNDKVIQFCENSGIKIKEYLMHYTRKEDWVKHFGPKWDDFLRKK 507
Query: 255 AEFDPKRILSPGQGIF 208
FDPKR+LSPGQ IF
Sbjct: 508 IMFDPKRLLSPGQDIF 523
Score = 43.9 bits (102), Expect(2) = 1e-22
Identities = 18/34 (52%), Positives = 24/34 (69%)
Frame = -2
Query: 541 SRISDFNEGVFKGIILKXNLTAGIVLVYPMNRNK 440
SRI DF++GV G++L T+G+ L YP NRNK
Sbjct: 395 SRIQDFHDGVINGLLLNQTSTSGVTLFYPTNRNK 428
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,220,920
Number of Sequences: 1393205
Number of extensions: 9268854
Number of successful extensions: 21769
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 20954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21687
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
