Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001786A_C01 KMC001786A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568028.1| formamidase - like protein; protein id: At4g375... 160 5e-54
pir||T04712 probable formamidase (EC 3.5.1.49) F19F18.40 - Arabi... 160 5e-54
gb|AAM64380.1| formamidase-like protein [Arabidopsis thaliana] 158 2e-53
ref|NP_568029.1| formamidase - like protein; protein id: At4g375... 160 1e-51
gb|AAK59505.1| putative formamidase [Arabidopsis thaliana] 160 5e-51
>ref|NP_568028.1| formamidase - like protein; protein id: At4g37550.1, supported by
cDNA: 23732. [Arabidopsis thaliana]
Length = 452
Score = 160 bits (405), Expect(2) = 5e-54
Identities = 77/87 (88%), Positives = 81/87 (92%)
Frame = -1
Query: 552 PVEPSFSEWLVFEGISVDERGKQHYLDATVAFKRAVLNAIDYISKFGYSKEQVYLLLSCI 373
PVEP FSEWLVFEGISVDE GKQHYLDATVA+KRAVLNAIDY+ KFGYSKEQVYLLLSC
Sbjct: 325 PVEPRFSEWLVFEGISVDESGKQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCC 384
Query: 372 PCEGRISSIVDAPNACATLAIPTAIFD 292
PCEGR+S IVD+PNA ATLAIPTAIFD
Sbjct: 385 PCEGRLSGIVDSPNAVATLAIPTAIFD 411
Score = 72.4 bits (176), Expect(2) = 5e-54
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = -2
Query: 287 DIRPKNNKVPTGPRLVRKPDVFKSTYDGNLPITKNPGATS 168
DIRPKN KVP GPR+VRKPDV KSTYDG LPITKNP ++S
Sbjct: 413 DIRPKNRKVPVGPRVVRKPDVLKSTYDGKLPITKNPSSSS 452
>pir||T04712 probable formamidase (EC 3.5.1.49) F19F18.40 - Arabidopsis thaliana
gi|4468980|emb|CAB38294.1| formamidase-like protein
[Arabidopsis thaliana] gi|7270737|emb|CAB80420.1|
formamidase-like protein [Arabidopsis thaliana]
Length = 432
Score = 160 bits (405), Expect(2) = 5e-54
Identities = 77/87 (88%), Positives = 81/87 (92%)
Frame = -1
Query: 552 PVEPSFSEWLVFEGISVDERGKQHYLDATVAFKRAVLNAIDYISKFGYSKEQVYLLLSCI 373
PVEP FSEWLVFEGISVDE GKQHYLDATVA+KRAVLNAIDY+ KFGYSKEQVYLLLSC
Sbjct: 305 PVEPRFSEWLVFEGISVDESGKQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCC 364
Query: 372 PCEGRISSIVDAPNACATLAIPTAIFD 292
PCEGR+S IVD+PNA ATLAIPTAIFD
Sbjct: 365 PCEGRLSGIVDSPNAVATLAIPTAIFD 391
Score = 72.4 bits (176), Expect(2) = 5e-54
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = -2
Query: 287 DIRPKNNKVPTGPRLVRKPDVFKSTYDGNLPITKNPGATS 168
DIRPKN KVP GPR+VRKPDV KSTYDG LPITKNP ++S
Sbjct: 393 DIRPKNRKVPVGPRVVRKPDVLKSTYDGKLPITKNPSSSS 432
>gb|AAM64380.1| formamidase-like protein [Arabidopsis thaliana]
Length = 452
Score = 158 bits (400), Expect(2) = 2e-53
Identities = 76/87 (87%), Positives = 81/87 (92%)
Frame = -1
Query: 552 PVEPSFSEWLVFEGISVDERGKQHYLDATVAFKRAVLNAIDYISKFGYSKEQVYLLLSCI 373
PVEP FSEWLVFEGISVDE GKQHYLDATVA+KRAVLNAIDY+ KFGYSKEQVYLLLSC
Sbjct: 325 PVEPRFSEWLVFEGISVDESGKQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCC 384
Query: 372 PCEGRISSIVDAPNACATLAIPTAIFD 292
PCEGR+S IVD+P+A ATLAIPTAIFD
Sbjct: 385 PCEGRLSGIVDSPSAVATLAIPTAIFD 411
Score = 72.4 bits (176), Expect(2) = 2e-53
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = -2
Query: 287 DIRPKNNKVPTGPRLVRKPDVFKSTYDGNLPITKNPGATS 168
DIRPKN KVP GPR+VRKPDV KSTYDG LPITKNP ++S
Sbjct: 413 DIRPKNRKVPVGPRVVRKPDVLKSTYDGKLPITKNPSSSS 452
>ref|NP_568029.1| formamidase - like protein; protein id: At4g37560.1, supported by
cDNA: gi_14334653 [Arabidopsis thaliana]
gi|23297225|gb|AAN12921.1| putative formamidase
[Arabidopsis thaliana]
Length = 452
Score = 160 bits (404), Expect(2) = 1e-51
Identities = 77/87 (88%), Positives = 81/87 (92%)
Frame = -1
Query: 552 PVEPSFSEWLVFEGISVDERGKQHYLDATVAFKRAVLNAIDYISKFGYSKEQVYLLLSCI 373
PVEP FSEWLVFEGISVDE G+QHYLDATVA+KRAVLNAIDY+ KFGYSKEQVYLLLSC
Sbjct: 325 PVEPRFSEWLVFEGISVDESGRQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCC 384
Query: 372 PCEGRISSIVDAPNACATLAIPTAIFD 292
PCEGRIS IVD+PNA ATLAIPTAIFD
Sbjct: 385 PCEGRISGIVDSPNAVATLAIPTAIFD 411
Score = 65.1 bits (157), Expect(2) = 1e-51
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = -2
Query: 287 DIRPKNNKVPTGPRLVRKPDVFKSTYDGNLPITKNPGATS 168
DIRPK KVPTG R+V+KPDV KSTYDG LPITKN ++S
Sbjct: 413 DIRPKTRKVPTGARIVKKPDVMKSTYDGKLPITKNSSSSS 452
>gb|AAK59505.1| putative formamidase [Arabidopsis thaliana]
Length = 452
Score = 160 bits (404), Expect(2) = 5e-51
Identities = 77/87 (88%), Positives = 81/87 (92%)
Frame = -1
Query: 552 PVEPSFSEWLVFEGISVDERGKQHYLDATVAFKRAVLNAIDYISKFGYSKEQVYLLLSCI 373
PVEP FSEWLVFEGISVDE G+QHYLDATVA+KRAVLNAIDY+ KFGYSKEQVYLLLSC
Sbjct: 325 PVEPRFSEWLVFEGISVDESGRQHYLDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCC 384
Query: 372 PCEGRISSIVDAPNACATLAIPTAIFD 292
PCEGRIS IVD+PNA ATLAIPTAIFD
Sbjct: 385 PCEGRISGIVDSPNAVATLAIPTAIFD 411
Score = 62.8 bits (151), Expect(2) = 5e-51
Identities = 28/40 (70%), Positives = 32/40 (80%)
Frame = -2
Query: 287 DIRPKNNKVPTGPRLVRKPDVFKSTYDGNLPITKNPGATS 168
DIRPK KVPTG R+V+KPDV KSTYDG LPI KN ++S
Sbjct: 413 DIRPKTRKVPTGARIVKKPDVMKSTYDGKLPIIKNSSSSS 452
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,379,959
Number of Sequences: 1393205
Number of extensions: 11014656
Number of successful extensions: 28290
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 27667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28284
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
