Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001784A_C01 KMC001784A_c01
(446 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB78487.1| 26S proteasome regulatory particle non-ATPase su... 84 3e-16
ref|NP_196197.1| 26S proteasome regulatory subunit S12 (RPN8), p... 79 1e-14
ref|NP_187736.1| 26S proteasome regulatory subunit S12 (RPN8), p... 77 6e-14
gb|AAH44358.1| Similar to proteasome (prosome, macropain) 26S su... 54 4e-07
pir||S65491 26S proteasome regulatory chain 12 - human gi|998688... 53 1e-06
>dbj|BAB78487.1| 26S proteasome regulatory particle non-ATPase subunit8 [Oryza
sativa (japonica cultivar-group)]
Length = 310
Score = 84.3 bits (207), Expect = 3e-16
Identities = 42/48 (87%), Positives = 44/48 (91%)
Frame = -2
Query: 445 DMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVPSAAAS 302
DMMLVIYLSSLIRSVIALHNLINNKMLNKEHE+AEDSK +PSAA S
Sbjct: 263 DMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSKPTAIPSAAGS 310
>ref|NP_196197.1| 26S proteasome regulatory subunit S12 (RPN8), putative; protein id:
At5g05780.1, supported by cDNA: 34868., supported by
cDNA: gi_14190400, supported by cDNA: gi_2351373
[Arabidopsis thaliana] gi|6919944|sp|O24412|PSD7_ARATH
Probable 26S proteasome non-ATPase regulatory subunit 7
(MOV34 protein) gi|2351374|gb|AAD03464.1| putative 26S
proteasome subunit athMOV34 [Arabidopsis thaliana]
gi|9759103|dbj|BAB09672.1| 26S proteasome regulatory
subunit S12 (MOV34 protein) [Arabidopsis thaliana]
gi|14190401|gb|AAK55681.1|AF378878_1 AT5g05780/MJJ3_19
[Arabidopsis thaliana] gi|21592993|gb|AAM64942.1| 26S
proteasome regulatory subunit S12 (MOV34 protein)
[Arabidopsis thaliana] gi|27363214|gb|AAO11526.1|
At5g05780/MJJ3_19 [Arabidopsis thaliana]
Length = 308
Score = 79.3 bits (194), Expect = 1e-14
Identities = 38/46 (82%), Positives = 43/46 (92%)
Frame = -2
Query: 445 DMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVPSAA 308
DMMLVIYLSSLIRSVIALHNLINNK+LNKEHE+AEDSK V +P+ +
Sbjct: 263 DMMLVIYLSSLIRSVIALHNLINNKLLNKEHEKAEDSKPVAIPATS 308
>ref|NP_187736.1| 26S proteasome regulatory subunit S12 (RPN8), putative; protein id:
At3g11270.1 [Arabidopsis thaliana]
gi|12321883|gb|AAG50979.1|AC073395_21 26S proteasome
regulatory subunit S12, putative; 66155-68483
[Arabidopsis thaliana]
Length = 310
Score = 76.6 bits (187), Expect = 6e-14
Identities = 37/43 (86%), Positives = 41/43 (95%)
Frame = -2
Query: 445 DMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVP 317
DMMLVIYLSSLIRSVIALH+LINNK+LNKEHE+AEDSK V +P
Sbjct: 263 DMMLVIYLSSLIRSVIALHSLINNKLLNKEHEKAEDSKPVDIP 305
>gb|AAH44358.1| Similar to proteasome (prosome, macropain) 26S subunit, non-ATPase,
7 (Mov34 homolog) [Danio rerio]
Length = 327
Score = 53.9 bits (128), Expect = 4e-07
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = -2
Query: 445 DMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAE 341
D MLV+YL+SLIRSV+ALHNLINNK+ N++ E+ E
Sbjct: 255 DQMLVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>pir||S65491 26S proteasome regulatory chain 12 - human gi|998688|gb|AAB34148.1|
erythrocyte 26 S protease subunit 12, 26 S protease
S12=26 S regulatory complex non-proteasomal and
non-ATPase subunit/Mov-34 protein homolog [human, HeLa
cells, Peptide, 321 aa] gi|1096204|prf||2111281A 26S
protease:SUBUNIT=12
Length = 321
Score = 52.8 bits (125), Expect = 1e-06
Identities = 23/35 (65%), Positives = 31/35 (87%)
Frame = -2
Query: 445 DMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAE 341
D M+V+YL+SLIRSV+ALHNLINNK+ N++ E+ E
Sbjct: 255 DQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,643,003
Number of Sequences: 1393205
Number of extensions: 7342664
Number of successful extensions: 25942
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 24885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25866
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
