Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001781A_C01 KMC001781A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P45444|DYHC_EMENI DYNEIN HEAVY CHAIN, CYTOSOLIC (DYHC) gi|539... 35 0.59
ref|NP_196658.1| zinc finger -like protein; protein id: At5g1097... 34 1.3
ref|NP_194651.1| pyrophosphate-dependent phosphofructo-1-kinase-... 33 2.9
gb|AAM91591.1| pyrophosphate-dependent phosphofructo-1-kinase-li... 33 2.9
ref|NP_567742.1| pyrophosphate-dependent phosphofructo-1-kinase;... 32 3.8
>sp|P45444|DYHC_EMENI DYNEIN HEAVY CHAIN, CYTOSOLIC (DYHC) gi|539384|pir||A53489 dynein
heavy chain, cytosolic - Emericella nidulans
gi|451539|gb|AAA18338.1| cytoplasmic dynein
Length = 4344
Score = 35.0 bits (79), Expect = 0.59
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -1
Query: 434 FHRPTTSALLSSSRGSVGRFEVVDTVMNSAVNKEYLVTGGTRLKASSNQE 285
F + SALLS +R + E +D ++N +NKEY TGG L QE
Sbjct: 3615 FVKQLESALLSETRFIIQDAEHLDPILNHVLNKEYQKTGGRVLIQLGKQE 3664
>ref|NP_196658.1| zinc finger -like protein; protein id: At5g10970.1 [Arabidopsis
thaliana] gi|11358935|pir||T50806 zinc finger-like
protein - Arabidopsis thaliana
gi|8979731|emb|CAB96852.1| zinc finger-like protein
[Arabidopsis thaliana]
Length = 272
Score = 33.9 bits (76), Expect = 1.3
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Frame = -1
Query: 536 SSNGFGSSCGSHHNLWSKPLIDQQAGKAKLAMAD----FHRPTTSALLSSSRGSVGRFEV 369
S N +G G + WS+ + QQ AKL + H+ + L+S+ ++GRF+V
Sbjct: 178 SYNVYGGEYGQIN--WSRIPLVQQPAIAKLTSTENHYNHHQMMIAPPLTSTCENIGRFDV 235
Query: 368 VDTVMNSAVNKEYLVTGGTRLKASSNQEEIKHLDLSLKL 252
+ ++ L G L + +E+ K+LDLSLKL
Sbjct: 236 GRIPVEFPTSE--LWQRGEELLKPAEEEKQKNLDLSLKL 272
>ref|NP_194651.1| pyrophosphate-dependent phosphofructo-1-kinase-like protein;
protein id: At4g29220.1 [Arabidopsis thaliana]
gi|7434214|pir||T13433 pyrophosphate-dependent
phosphofructo-1-kinase homolog T17A13.40 - Arabidopsis
thaliana gi|7269820|emb|CAB79680.1|
pyrophosphate-dependent phosphofructo-1-kinase-like
protein [Arabidopsis thaliana]
Length = 473
Score = 32.7 bits (73), Expect = 2.9
Identities = 18/61 (29%), Positives = 36/61 (58%), Gaps = 1/61 (1%)
Frame = -1
Query: 437 DFHRPTTSALLSSSRGSVGRFEVVDTVMNSAVNKEYLVTG-GTRLKASSNQEEIKHLDLS 261
D HR + +L +SRG ++VD++ + +N+ Y++ G G++ A++ EEI+ L
Sbjct: 152 DIHR-SGGTILGTSRGGHNTTKIVDSIQDRGINQVYIIGGDGSQKGAAAIFEEIRKRKLK 210
Query: 260 L 258
+
Sbjct: 211 V 211
>gb|AAM91591.1| pyrophosphate-dependent phosphofructo-1-kinase-like protein
[Arabidopsis thaliana]
Length = 473
Score = 32.7 bits (73), Expect = 2.9
Identities = 18/61 (29%), Positives = 36/61 (58%), Gaps = 1/61 (1%)
Frame = -1
Query: 437 DFHRPTTSALLSSSRGSVGRFEVVDTVMNSAVNKEYLVTG-GTRLKASSNQEEIKHLDLS 261
D HR + +L +SRG ++VD++ + +N+ Y++ G G++ A++ EEI+ L
Sbjct: 152 DIHR-SGGTILGTSRGGHNTTKIVDSIQDRGINQVYIIGGDGSQKGAAAIFEEIRKRKLK 210
Query: 260 L 258
+
Sbjct: 211 V 211
>ref|NP_567742.1| pyrophosphate-dependent phosphofructo-1-kinase; protein id:
At4g26270.1, supported by cDNA: gi_15146207, supported
by cDNA: gi_19699123 [Arabidopsis thaliana]
gi|15146208|gb|AAK83587.1| AT4g26270/T25K17_80
[Arabidopsis thaliana] gi|19699124|gb|AAL90928.1|
AT4g26270/T25K17_80 [Arabidopsis thaliana]
Length = 489
Score = 32.3 bits (72), Expect = 3.8
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -1
Query: 437 DFHRPTTSALLSSSRGSVGRFEVVDTVMNSAVNKEYLVTG-GTRLKASSNQEEIKHLDLS 261
D H+ +L +SRG ++VD++ + +N+ Y++ G GT+ AS EEI+ L
Sbjct: 151 DIHK-RGGTILGTSRGGHDTTKIVDSIQDRGINQVYIIGGDGTQRGASVIFEEIRRRGLK 209
Query: 260 L 258
+
Sbjct: 210 V 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,208,047
Number of Sequences: 1393205
Number of extensions: 7844100
Number of successful extensions: 18826
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18676
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
