Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001774A_C01 KMC001774A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565248.1| expressed protein; protein id: At1g80940.1, sup... 154 2e-46
gb|AAO72674.1| myosin-like protein [Oryza sativa (japonica culti... 32 1.2
gb|AAO79959.1| major facilitator family transporter [Enterococcu... 33 2.0
ref|XP_236461.1| similar to sorting nexin 14 isoform a [Homo sap... 33 2.6
ref|NP_188537.1| cell wall protien-related; protein id: At3g1907... 32 4.5
>ref|NP_565248.1| expressed protein; protein id: At1g80940.1, supported by cDNA:
37300., supported by cDNA: gi_12083331, supported by
cDNA: gi_17380691, supported by cDNA: gi_20259216
[Arabidopsis thaliana] gi|25373352|pir||D96842
hypothetical protein F23A5.30 [imported] - Arabidopsis
thaliana gi|6503306|gb|AAF14682.1|AC011713_30 ESTs
gb|AI993522, gb|T88335 and gb|AA540932 come from this
gene. [Arabidopsis thaliana]
gi|12083332|gb|AAG48825.1|AF332462_1 unknown protein
[Arabidopsis thaliana] gi|17380692|gb|AAL36176.1|
unknown protein [Arabidopsis thaliana]
gi|20259217|gb|AAM14324.1| unknown protein [Arabidopsis
thaliana]
Length = 213
Score = 154 bits (388), Expect(2) = 2e-46
Identities = 73/84 (86%), Positives = 81/84 (95%), Gaps = 1/84 (1%)
Frame = -2
Query: 584 LEPIKNINGRRPSA-ESLLPPPDFDAANYPKGWLIGKKRKLVNVDVVESMRRIAIQEMNR 408
LEPI N+NG+RP+A +SLLPPPDF+ ANYPKGWLIGKKRKLVNVDVVESMRRIA+QEMNR
Sbjct: 89 LEPITNLNGKRPTAADSLLPPPDFETANYPKGWLIGKKRKLVNVDVVESMRRIAVQEMNR 148
Query: 407 KDREIDGLNEQLDEDSRCLEHLQM 336
KDREIDGLNEQL+EDSRCLEHLQ+
Sbjct: 149 KDREIDGLNEQLEEDSRCLEHLQL 172
Score = 53.5 bits (127), Expect(2) = 2e-46
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = -3
Query: 352 LSTCKCQLVEERSKRARVERDNAMLQEQVNMLMNMLQETEPMGDEDQDQEEP 197
L + QL++ERSKR +ER+N ML+EQV+ML+NM+QE D+++ EEP
Sbjct: 167 LEHLQLQLLQERSKRTEIERENTMLKEQVDMLVNMIQE-----DDEEGAEEP 213
>gb|AAO72674.1| myosin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 257
Score = 32.3 bits (72), Expect(2) = 1.2
Identities = 14/27 (51%), Positives = 22/27 (80%)
Frame = -2
Query: 419 EMNRKDREIDGLNEQLDEDSRCLEHLQ 339
E+++KD+EI+GL + LDE+ R LE L+
Sbjct: 42 ELSKKDQEIEGLMQALDEEERELEVLE 68
Score = 20.8 bits (42), Expect(2) = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 298 ERDNAMLQEQVNMLMNMLQETE 233
ER+ +L+ + N L MLQE E
Sbjct: 61 ERELEVLENKSNDLEKMLQEKE 82
>gb|AAO79959.1| major facilitator family transporter [Enterococcus faecalis V583]
Length = 411
Score = 33.5 bits (75), Expect = 2.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 313 CFVLPQAGICKCSRHRESSSSCSFSPSISLSFLFISWMAILRMLSTTSTLT 465
CF+ P I HRE+ S +F + LFI+++A L L+ +S L+
Sbjct: 184 CFIFPVKNIELTPEHREALSKWNFDSFVEKKVLFITFIAFLMGLAYSSVLS 234
>ref|XP_236461.1| similar to sorting nexin 14 isoform a [Homo sapiens] [Rattus
norvegicus]
Length = 563
Score = 33.1 bits (74), Expect = 2.6
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 17/89 (19%)
Frame = +1
Query: 226 PLAQFLVTCS*ACSLAL-----------------AALHYLFPLEHVCFVLPQAGICKCSR 354
PL FL+ C A SL L L LFP H C V G KC R
Sbjct: 56 PLFCFLLLCLSAASLLLNRPYALTFVLVGTTYQQLGLQELFPQGHSCAV---CGKVKCKR 112
Query: 355 HRESSSSCSFSPSISLSFLFISWMAILRM 441
HR+ + SF + ++ F + + + R+
Sbjct: 113 HRDVTDDESFVDELRITLRFFASVLVRRI 141
>ref|NP_188537.1| cell wall protien-related; protein id: At3g19070.1 [Arabidopsis
thaliana]
Length = 346
Score = 32.3 bits (72), Expect = 4.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 364 SSSSCSFSPSISLSFLFISWMAILRMLSTTSTLTSFRFFPMSHPF 498
S SS S P SL F S ++ S++STL + FFP S P+
Sbjct: 133 SMSSSSLQPPASLREFFTSSVSYSHQPSSSSTLATSSFFPSSMPY 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,787,702
Number of Sequences: 1393205
Number of extensions: 10506018
Number of successful extensions: 34162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 32838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34134
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
