Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001768A_C01 KMC001768A_c01
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564467.1| acetyl-CoA carboxylase, putative; protein id: A... 166 2e-40
gb|AAG52317.1|AC021666_6 unknown protein; 24499-21911 [Arabidops... 166 2e-40
ref|NP_564162.1| expressed protein; protein id: At1g22200.1, sup... 156 3e-37
gb|AAF18633.1|AC006228_4 F5J5.4 [Arabidopsis thaliana] 153 2e-36
ref|NP_057050.1| serologically defined breast cancer antigen 84;... 119 4e-26
>ref|NP_564467.1| acetyl-CoA carboxylase, putative; protein id: At1g36050.1
[Arabidopsis thaliana]
Length = 416
Score = 166 bits (421), Expect = 2e-40
Identities = 77/104 (74%), Positives = 93/104 (89%), Gaps = 2/104 (1%)
Frame = -1
Query: 666 YFVKVVPTIYTDIRGRVIRSNQYSVTEHFKSSELGI--AIPGVFFFYDISPIKVSFKEEH 493
YF+KVVPT+YTDIRG I+SNQ+SVTEH KSSE G ++PGVFFFYD+SPIKV+F EEH
Sbjct: 312 YFIKVVPTVYTDIRGHTIQSNQFSVTEHVKSSEAGQLQSLPGVFFFYDLSPIKVTFTEEH 371
Query: 492 IPFLHFLTNVCAIIGGIFTVAGIVDSSIYYGQRTIKKKMEIGKY 361
I FLHFLTNVCAI+GG+FTV+GI+D+ IY+GQ+ IKKKMEIGK+
Sbjct: 372 ISFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQKAIKKKMEIGKF 415
>gb|AAG52317.1|AC021666_6 unknown protein; 24499-21911 [Arabidopsis thaliana]
gi|27808598|gb|AAO24579.1| At1g36050 [Arabidopsis
thaliana]
Length = 386
Score = 166 bits (421), Expect = 2e-40
Identities = 77/104 (74%), Positives = 93/104 (89%), Gaps = 2/104 (1%)
Frame = -1
Query: 666 YFVKVVPTIYTDIRGRVIRSNQYSVTEHFKSSELGI--AIPGVFFFYDISPIKVSFKEEH 493
YF+KVVPT+YTDIRG I+SNQ+SVTEH KSSE G ++PGVFFFYD+SPIKV+F EEH
Sbjct: 282 YFIKVVPTVYTDIRGHTIQSNQFSVTEHVKSSEAGQLQSLPGVFFFYDLSPIKVTFTEEH 341
Query: 492 IPFLHFLTNVCAIIGGIFTVAGIVDSSIYYGQRTIKKKMEIGKY 361
I FLHFLTNVCAI+GG+FTV+GI+D+ IY+GQ+ IKKKMEIGK+
Sbjct: 342 ISFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQKAIKKKMEIGKF 385
>ref|NP_564162.1| expressed protein; protein id: At1g22200.1, supported by cDNA:
16380., supported by cDNA: gi_13878150, supported by
cDNA: gi_21281041 [Arabidopsis thaliana]
gi|25350066|pir||F86354 F16L1.7 protein - Arabidopsis
thaliana gi|9454530|gb|AAF87853.1|AC073942_7 Contains
similarity to a PR00989 protein from Homo sapiens
gi|7959731. EST gb|AI995648 comes from this gene.
[Arabidopsis thaliana]
gi|13878151|gb|AAK44153.1|AF370338_1 unknown protein
[Arabidopsis thaliana] gi|21281042|gb|AAM44956.1|
unknown protein [Arabidopsis thaliana]
gi|21553754|gb|AAM62847.1| unknown [Arabidopsis
thaliana]
Length = 386
Score = 156 bits (394), Expect = 3e-37
Identities = 73/104 (70%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = -1
Query: 666 YFVKVVPTIYTDIRGRVIRSNQYSVTEHFKSSELGI--AIPGVFFFYDISPIKVSFKEEH 493
YF+KVVP+IYTD+ I+SNQ+SVTEHF++ E G + PGVFF+YD+SPIKV F+E+H
Sbjct: 282 YFIKVVPSIYTDVHQNTIQSNQFSVTEHFQNMEAGRMQSPPGVFFYYDLSPIKVIFEEQH 341
Query: 492 IPFLHFLTNVCAIIGGIFTVAGIVDSSIYYGQRTIKKKMEIGKY 361
+ FLHFLTNVCAI+GGIFTV+GIVDS IY+GQR IKKKMEIGK+
Sbjct: 342 VEFLHFLTNVCAIVGGIFTVSGIVDSFIYHGQRAIKKKMEIGKF 385
>gb|AAF18633.1|AC006228_4 F5J5.4 [Arabidopsis thaliana]
Length = 440
Score = 153 bits (387), Expect = 2e-36
Identities = 78/128 (60%), Positives = 93/128 (71%), Gaps = 26/128 (20%)
Frame = -1
Query: 666 YFVKVVPTIYTDIRGRVIRSNQYSVTEHFKSSELGI--AIPGVFFFYDISPIKVSFKEEH 493
YF+KVVPT+YTDIRG I+SNQ+SVTEH KSSE G ++PGVFFFYD+SPIKV+F EEH
Sbjct: 312 YFIKVVPTVYTDIRGHTIQSNQFSVTEHVKSSEAGQLQSLPGVFFFYDLSPIKVTFTEEH 371
Query: 492 IPFLHFLTNVCAIIGGI------------------------FTVAGIVDSSIYYGQRTIK 385
I FLHFLTNVCAI+GGI FTV+GI+D+ IY+GQ+ IK
Sbjct: 372 ISFLHFLTNVCAIVGGISLISIYHNNTCWLTHIKIRNETCVFTVSGIIDAFIYHGQKAIK 431
Query: 384 KKMEIGKY 361
KKMEIGK+
Sbjct: 432 KKMEIGKF 439
>ref|NP_057050.1| serologically defined breast cancer antigen 84; hypothetical 43.2
Kd protein [Homo sapiens]
gi|4689108|gb|AAD27763.1|AF077030_1 hypothetical 43.2
kDa protein [Homo sapiens]
gi|4929577|gb|AAD34049.1|AF151812_1 CGI-54 protein [Homo
sapiens] gi|7671663|emb|CAB89412.1| dJ477O4.2.1 (CGI-54
(LOC51614) isoform 1) [Homo sapiens]
gi|14602515|gb|AAH09765.1|AAH09765 hypothetical 43.2 Kd
protein [Homo sapiens]
gi|15559308|gb|AAH14014.1|AAH14014 Similar to
serologically defined breast cancer antigen 84 [Homo
sapiens]
Length = 383
Score = 119 bits (298), Expect = 4e-26
Identities = 58/104 (55%), Positives = 77/104 (73%), Gaps = 3/104 (2%)
Frame = -1
Query: 666 YFVKVVPTIYTDIRGRVIRSNQYSVTEHFKSSE--LGI-AIPGVFFFYDISPIKVSFKEE 496
YFVKVVPT+Y + G V+R+NQ+SVT H K + LG +PGVF Y++SP+ V E+
Sbjct: 278 YFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEK 337
Query: 495 HIPFLHFLTNVCAIIGGIFTVAGIVDSSIYYGQRTIKKKMEIGK 364
H F HFLT VCAIIGG+FTVAG++DS IY+ R I+KK+++GK
Sbjct: 338 HRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,234,292
Number of Sequences: 1393205
Number of extensions: 11726731
Number of successful extensions: 36983
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 35917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36944
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
