Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001767A_C01 KMC001767A_c01
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200931.1| putative protein; protein id: At5g61230.1, supp... 130 1e-34
pir||T45609 hypothetical protein F13G24.40 - Arabidopsis thalian... 129 4e-34
ref|NP_568184.1| putative protein; protein id: At5g07840.1, supp... 129 4e-34
pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With... 68 1e-10
pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With... 68 1e-10
>ref|NP_200931.1| putative protein; protein id: At5g61230.1, supported by cDNA:
gi_14517559 [Arabidopsis thaliana]
gi|9759468|dbj|BAB10384.1| gene_id:MAF19.22~unknown
protein [Arabidopsis thaliana]
gi|14517560|gb|AAK62670.1| AT5g61230/maf19_230
[Arabidopsis thaliana] gi|18700228|gb|AAL77724.1|
AT5g61230/maf19_230 [Arabidopsis thaliana]
Length = 174
Score = 130 bits (326), Expect(2) = 1e-34
Identities = 62/86 (72%), Positives = 74/86 (85%)
Frame = -1
Query: 663 KLVRKLLKEGTDVNVSAGGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGW 484
K V++LL +G DVN A GPKSKGV+ LHLAAEGGH+ VMD LLERGANIDA+T G+CGW
Sbjct: 43 KSVKQLLDQGMDVNALAWGPKSKGVSALHLAAEGGHIEVMDLLLERGANIDAKTWGSCGW 102
Query: 483 TPLHIAAQERRKDAVKFLIENGALLA 406
TPLH AA+ER+++AVKFL+ENGA LA
Sbjct: 103 TPLHAAAKERKREAVKFLVENGAFLA 128
Score = 38.9 bits (89), Expect(2) = 1e-34
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = -2
Query: 410 LPPDINDCRFNPPLHYCPGP*MGL*QR*SELRHVD-----SSAGETSSSSES 270
L DI D RFNPP+HYC GL E++ ++ SS G+TSSSS++
Sbjct: 127 LADDITDTRFNPPVHYC----HGLEWAYEEMKKLNSESSSSSGGDTSSSSDN 174
>pir||T45609 hypothetical protein F13G24.40 - Arabidopsis thaliana
gi|6562298|emb|CAB62596.1| putative protein [Arabidopsis
thaliana]
Length = 213
Score = 129 bits (323), Expect(2) = 4e-34
Identities = 60/85 (70%), Positives = 73/85 (85%)
Frame = -1
Query: 663 KLVRKLLKEGTDVNVSAGGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGW 484
K V++LL +G DVN A GPKSKG+TPLHLAA+GGH+ VMD LLERGAN++ART GACGW
Sbjct: 83 KAVKELLDQGADVNALACGPKSKGMTPLHLAAKGGHIEVMDLLLERGANMEARTSGACGW 142
Query: 483 TPLHIAAQERRKDAVKFLIENGALL 409
TPLH AA+ER+++AVKFL+ NGA L
Sbjct: 143 TPLHAAAKERKREAVKFLVGNGAFL 167
Score = 38.1 bits (87), Expect(2) = 4e-34
Identities = 20/45 (44%), Positives = 23/45 (50%)
Frame = -2
Query: 410 LPPDINDCRFNPPLHYCPGP*MGL*QR*SELRHVDSSAGETSSSS 276
LP DI D RFNPP+ YC G +R S G+TS SS
Sbjct: 167 LPDDITDSRFNPPVQYCHGLEWAYEERKKLSEDTSLSCGDTSCSS 211
>ref|NP_568184.1| putative protein; protein id: At5g07840.1, supported by cDNA:
gi_16226368 [Arabidopsis thaliana]
gi|10176718|dbj|BAB09948.1| gene_id:MXM12.8~unknown
protein [Arabidopsis thaliana]
gi|16226369|gb|AAL16148.1|AF428380_1 AT5g07840/F13G24_40
[Arabidopsis thaliana] gi|21928045|gb|AAM78051.1|
AT5g07840/F13G24_40 [Arabidopsis thaliana]
Length = 175
Score = 129 bits (323), Expect(2) = 4e-34
Identities = 60/85 (70%), Positives = 73/85 (85%)
Frame = -1
Query: 663 KLVRKLLKEGTDVNVSAGGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGW 484
K V++LL +G DVN A GPKSKG+TPLHLAA+GGH+ VMD LLERGAN++ART GACGW
Sbjct: 45 KAVKELLDQGADVNALACGPKSKGMTPLHLAAKGGHIEVMDLLLERGANMEARTSGACGW 104
Query: 483 TPLHIAAQERRKDAVKFLIENGALL 409
TPLH AA+ER+++AVKFL+ NGA L
Sbjct: 105 TPLHAAAKERKREAVKFLVGNGAFL 129
Score = 38.1 bits (87), Expect(2) = 4e-34
Identities = 20/45 (44%), Positives = 23/45 (50%)
Frame = -2
Query: 410 LPPDINDCRFNPPLHYCPGP*MGL*QR*SELRHVDSSAGETSSSS 276
LP DI D RFNPP+ YC G +R S G+TS SS
Sbjct: 129 LPDDITDSRFNPPVQYCHGLEWAYEERKKLSEDTSLSCGDTSCSS 173
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 67.8 bits (164), Expect = 1e-10
Identities = 39/83 (46%), Positives = 52/83 (61%)
Frame = -1
Query: 663 KLVRKLLKEGTDVNVSAGGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGW 484
++V+ LL+ G DVN G TPLHLAA GHL V+ LLE GA+++A+ K G
Sbjct: 49 EVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GR 102
Query: 483 TPLHIAAQERRKDAVKFLIENGA 415
TPLH+AA+ + VK L+E GA
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAGA 125
Score = 67.8 bits (164), Expect = 1e-10
Identities = 39/83 (46%), Positives = 52/83 (61%)
Frame = -1
Query: 663 KLVRKLLKEGTDVNVSAGGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGW 484
++V+ LL+ G DVN G TPLHLAA GHL V+ LLE GA+++A+ K G
Sbjct: 16 EVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GR 69
Query: 483 TPLHIAAQERRKDAVKFLIENGA 415
TPLH+AA+ + VK L+E GA
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGA 92
Score = 60.1 bits (144), Expect = 3e-08
Identities = 32/60 (53%), Positives = 41/60 (68%)
Frame = -1
Query: 594 GVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIAAQERRKDAVKFLIENGA 415
G TPLHLAA GHL V+ LLE GA+++A+ K G TPLH+AA+ + VK L+E GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 59
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats gi|28373836|pdb|1N0Q|B Chain
B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.8 bits (164), Expect = 1e-10
Identities = 39/83 (46%), Positives = 52/83 (61%)
Frame = -1
Query: 663 KLVRKLLKEGTDVNVSAGGPKSKGVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGW 484
++V+ LL+ G DVN G TPLHLAA GHL V+ LLE GA+++A+ K G
Sbjct: 16 EVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GR 69
Query: 483 TPLHIAAQERRKDAVKFLIENGA 415
TPLH+AA+ + VK L+E GA
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGA 92
Score = 60.1 bits (144), Expect = 3e-08
Identities = 32/60 (53%), Positives = 41/60 (68%)
Frame = -1
Query: 594 GVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIAAQERRKDAVKFLIENGA 415
G TPLHLAA GHL V+ LLE GA+++A+ K G TPLH+AA+ + VK L+E GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--GRTPLHLAARNGHLEVVKLLLEAGA 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 624,910,343
Number of Sequences: 1393205
Number of extensions: 14166248
Number of successful extensions: 45195
Number of sequences better than 10.0: 1658
Number of HSP's better than 10.0 without gapping: 36610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42836
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
