Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001762A_C01 KMC001762A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193878.1| putative protein; protein id: At4g21470.1 [Arab... 215 5e-55
gb|AAN05527.1| putative glutamine synthetase [Oryza sativa (japo... 211 6e-54
gb|AAM01030.1|AC091735_3 Putative Riboflavin biosynthesis protei... 207 1e-52
gb|AAH33521.1| RIKEN cDNA 0610038L10 gene [Mus musculus] 135 4e-31
ref|NP_062310.1| hypothetical protein 0610038L10Rik [Mus musculu... 135 4e-31
>ref|NP_193878.1| putative protein; protein id: At4g21470.1 [Arabidopsis thaliana]
gi|7485723|pir||T05155 hypothetical protein F18E5.90 -
Arabidopsis thaliana gi|3080391|emb|CAA18711.1| putative
protein [Arabidopsis thaliana]
gi|7268944|emb|CAB81254.1| putative protein [Arabidopsis
thaliana]
Length = 282
Score = 215 bits (547), Expect = 5e-55
Identities = 99/126 (78%), Positives = 112/126 (88%)
Frame = -2
Query: 678 GSKVLGVPTANLSTEGYSELLAEHPTGVYFGWAGLSGRGIFKMVMSIGWNPYFKNQEKAI 499
GSKVLG+PTANLST+ Y++ L EHP+GVYFGWAGL+ RG+FKMVMSIGWNPYF N+EK I
Sbjct: 155 GSKVLGIPTANLSTKDYADELVEHPSGVYFGWAGLAKRGVFKMVMSIGWNPYFNNKEKTI 214
Query: 498 EPWLLHDFDEDFYGEELRLVIVGYIRAEANFPTLESLIAKIHEDRRVAERALDLPLYSSY 319
EPWLLHDF EDFYGEELRL+IVGYIR EANF +LESLIAKIHEDR VAE+ALDLP Y+ +
Sbjct: 215 EPWLLHDFTEDFYGEELRLIIVGYIRPEANFSSLESLIAKIHEDREVAEKALDLPSYAKF 274
Query: 318 KNDSYL 301
K D YL
Sbjct: 275 KGDPYL 280
>gb|AAN05527.1| putative glutamine synthetase [Oryza sativa (japonica
cultivar-group)]
Length = 397
Score = 211 bits (538), Expect = 6e-54
Identities = 98/129 (75%), Positives = 113/129 (86%)
Frame = -2
Query: 678 GSKVLGVPTANLSTEGYSELLAEHPTGVYFGWAGLSGRGIFKMVMSIGWNPYFKNQEKAI 499
GSKVLG+PTANL E +S++L+EH +GVYFGWAGLS RGIFKMVMSIGWNPYF N EK I
Sbjct: 252 GSKVLGIPTANLPAENFSDVLSEHTSGVYFGWAGLSTRGIFKMVMSIGWNPYFDNTEKTI 311
Query: 498 EPWLLHDFDEDFYGEELRLVIVGYIRAEANFPTLESLIAKIHEDRRVAERALDLPLYSSY 319
EPWLLHDF EDFYGEELRLVIVGYIR EANFP+LESLI +IHED R++++AL+LPLY+ Y
Sbjct: 312 EPWLLHDFGEDFYGEELRLVIVGYIRPEANFPSLESLIERIHEDARISDKALNLPLYAKY 371
Query: 318 KNDSYLRIS 292
K+ YLR S
Sbjct: 372 KDSPYLRNS 380
>gb|AAM01030.1|AC091735_3 Putative Riboflavin biosynthesis protein ribF [Oryza sativa]
Length = 329
Score = 207 bits (527), Expect = 1e-52
Identities = 97/129 (75%), Positives = 111/129 (85%)
Frame = -2
Query: 678 GSKVLGVPTANLSTEGYSELLAEHPTGVYFGWAGLSGRGIFKMVMSIGWNPYFKNQEKAI 499
GSKVLG+PTANL E +S++L+EH + VYFGWAGLS RGI+KMVMSIGWNPYF N EK I
Sbjct: 184 GSKVLGIPTANLPAENFSDVLSEHTSRVYFGWAGLSTRGIYKMVMSIGWNPYFDNTEKTI 243
Query: 498 EPWLLHDFDEDFYGEELRLVIVGYIRAEANFPTLESLIAKIHEDRRVAERALDLPLYSSY 319
EPWLLHDF EDFYGEELRLVIVGYIR EANFP+LESLI +IHED R+AE+AL+LPLY+ Y
Sbjct: 244 EPWLLHDFGEDFYGEELRLVIVGYIRPEANFPSLESLIERIHEDARIAEKALNLPLYAKY 303
Query: 318 KNDSYLRIS 292
+ YLR S
Sbjct: 304 TDSPYLRNS 312
>gb|AAH33521.1| RIKEN cDNA 0610038L10 gene [Mus musculus]
Length = 211
Score = 135 bits (341), Expect = 4e-31
Identities = 63/129 (48%), Positives = 89/129 (68%)
Frame = -2
Query: 678 GSKVLGVPTANLSTEGYSELLAEHPTGVYFGWAGLSGRGIFKMVMSIGWNPYFKNQEKAI 499
GSK LG+PTAN + L A+ TG+Y+GWA + + KMV+SIGWNPY+KN +K++
Sbjct: 75 GSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGDVHKMVVSIGWNPYYKNVKKSM 134
Query: 498 EPWLLHDFDEDFYGEELRLVIVGYIRAEANFPTLESLIAKIHEDRRVAERALDLPLYSSY 319
E ++H F EDFYGE L + IVGY+R E NF +LESLI+ I D A++ LDLP +
Sbjct: 135 ETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKQLDLPEHLKL 194
Query: 318 KNDSYLRIS 292
K+D++ ++S
Sbjct: 195 KDDNFFQVS 203
>ref|NP_062310.1| hypothetical protein 0610038L10Rik [Mus musculus]
gi|12833060|dbj|BAB22372.1| unnamed protein product [Mus
musculus] gi|12842488|dbj|BAB25622.1| unnamed protein
product [Mus musculus] gi|12846170|dbj|BAB27057.1|
unnamed protein product [Mus musculus]
Length = 155
Score = 135 bits (341), Expect = 4e-31
Identities = 63/129 (48%), Positives = 89/129 (68%)
Frame = -2
Query: 678 GSKVLGVPTANLSTEGYSELLAEHPTGVYFGWAGLSGRGIFKMVMSIGWNPYFKNQEKAI 499
GSK LG+PTAN + L A+ TG+Y+GWA + + KMV+SIGWNPY+KN +K++
Sbjct: 19 GSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGDVHKMVVSIGWNPYYKNVKKSM 78
Query: 498 EPWLLHDFDEDFYGEELRLVIVGYIRAEANFPTLESLIAKIHEDRRVAERALDLPLYSSY 319
E ++H F EDFYGE L + IVGY+R E NF +LESLI+ I D A++ LDLP +
Sbjct: 79 ETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKQLDLPEHLKL 138
Query: 318 KNDSYLRIS 292
K+D++ ++S
Sbjct: 139 KDDNFFQVS 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,496,430
Number of Sequences: 1393205
Number of extensions: 12298230
Number of successful extensions: 26205
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 25466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26176
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
