Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001759A_C01 KMC001759A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191029.1| sugar-phosphate isomerase - like protein; prote... 44 0.001
ref|XP_159439.1| hypothetical protein XP_159439 [Mus musculus] 33 2.7
sp|Q25197|HTK7_HYDAT Putative insulin-like peptide receptor prec... 33 3.5
gb|AAH44071.1| Similar to coagulation factor II (thrombin) recep... 32 5.9
>ref|NP_191029.1| sugar-phosphate isomerase - like protein; protein id: At3g54690.1,
supported by cDNA: 36743. [Arabidopsis thaliana]
gi|11278593|pir||T47628 sugar-phosphate isomerase-like
protein - Arabidopsis thaliana
gi|7258373|emb|CAB77589.1| sugar-phosphate
isomerase-like protein [Arabidopsis thaliana]
Length = 350
Score = 44.3 bits (103), Expect = 0.001
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -3
Query: 587 FLPVINDDIVVIGIVTLHGLVSAGL 513
FLPV+N+D +IGIVTLHGLVSAGL
Sbjct: 326 FLPVVNEDNTLIGIVTLHGLVSAGL 350
>ref|XP_159439.1| hypothetical protein XP_159439 [Mus musculus]
Length = 244
Score = 33.1 bits (74), Expect = 2.7
Identities = 19/66 (28%), Positives = 30/66 (44%), Gaps = 13/66 (19%)
Frame = -3
Query: 299 TQFLVAFCFWCTSITVSPED--SEGFFFI-----------LYSHIFWVQKVVIII*CHVL 159
T+ +A WC+ VSP D E F+F+ LY W ++ + + CH
Sbjct: 166 TEMCLAAFGWCSGTVVSPRDGHKEDFYFVSSDGAVVHISNLYFFGVWHERCLAVAVCHEN 225
Query: 158 TPADIM 141
PA+I+
Sbjct: 226 LPAEIL 231
>sp|Q25197|HTK7_HYDAT Putative insulin-like peptide receptor precursor
gi|7494500|pir||T18534 protein-tyrosine kinase - Hydra
vulgaris gi|858747|gb|AAA68205.1| protein-tyrosine kinase
Length = 1477
Score = 32.7 bits (73), Expect = 3.5
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 219 FVLS--HFLGPEGCDYYLMSCSHTCRHHGPVSCSSFLVLI 106
FVLS H PEGCDY L C H P SFL ++
Sbjct: 1264 FVLSNGHLDYPEGCDYQLREFMSLCWHRDPKMRPSFLEIV 1303
>gb|AAH44071.1| Similar to coagulation factor II (thrombin) receptor-like 2
[Xenopus laevis]
Length = 389
Score = 32.0 bits (71), Expect = 5.9
Identities = 27/104 (25%), Positives = 49/104 (46%), Gaps = 14/104 (13%)
Frame = -3
Query: 353 FIYLFIESFFVPVSI*SPTQFLVAFCFWCTSITVSPEDSEGF--------FFILYSHIFW 198
FI + + F +P S+ VAFC++ ++ + + F FFI+++ F
Sbjct: 264 FISMVVFGFLIPFSV-------VAFCYFSIIRALTANEQKRFWYVKITVLFFIIFALCFT 316
Query: 197 VQKVVIII---*CHVLTPADIMGLFLVAVSLCSL---LDELLAF 84
++++I H D+ G++L+A+ L SL LD L F
Sbjct: 317 PSNLILLIHQVRYHHSHNDDMYGIYLMALCLTSLNSCLDPFLYF 360
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,050,930
Number of Sequences: 1393205
Number of extensions: 9913796
Number of successful extensions: 27153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27139
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
