Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001755A_C01 KMC001755A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566396.1| VAMP protein SEC22; protein id: At3g11660.1, su... 130 8e-30
gb|AAO41900.1| putative VAMP protein SEC22 [Arabidopsis thaliana] 130 8e-30
ref|NP_181140.1| hairpin-induced protein, putative (HIN1); prote... 125 3e-28
ref|NP_190815.1| hairpin-induced protein, putative (HIN1); prote... 115 4e-25
ref|NP_196251.1| hairpin-induced protein, putative (HIN1); prote... 113 2e-24
>ref|NP_566396.1| VAMP protein SEC22; protein id: At3g11660.1, supported by cDNA:
8166., supported by cDNA: gi_9502171 [Arabidopsis
thaliana] gi|6041819|gb|AAF02134.1|AC009918_6 unknown
protein [Arabidopsis thaliana]
gi|9502172|gb|AAF88021.1|AF264697_1 NDR1/HIN1-Like
protein 1 [Arabidopsis thaliana]
gi|21595601|gb|AAM66116.1| harpin-induced protein-like
[Arabidopsis thaliana]
Length = 209
Score = 130 bits (328), Expect = 8e-30
Identities = 58/96 (60%), Positives = 74/96 (76%)
Frame = -1
Query: 542 HKEFDVWSPFVSGNSVPVAPFNFVGLGQDQANGNVFITVKVDGRVRWKVGAFVSGRYHLY 363
HK+ D+WSPFV G SVP+APFN V L D+ NG V + ++ DGRVRWKVG F++G+YHL+
Sbjct: 115 HKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLH 174
Query: 362 VRCPAYISLGSRGNGVFVGENNAVKYQVVQRCSVSV 255
V+CPAYI+ G++ NGV VG+ NAVKY CSVSV
Sbjct: 175 VKCPAYINFGNKANGVIVGD-NAVKYTFTTSCSVSV 209
>gb|AAO41900.1| putative VAMP protein SEC22 [Arabidopsis thaliana]
Length = 209
Score = 130 bits (328), Expect = 8e-30
Identities = 58/96 (60%), Positives = 74/96 (76%)
Frame = -1
Query: 542 HKEFDVWSPFVSGNSVPVAPFNFVGLGQDQANGNVFITVKVDGRVRWKVGAFVSGRYHLY 363
HK+ D+WSPFV G SVP+APFN V L D+ NG V + ++ DGRVRWKVG F++G+YHL+
Sbjct: 115 HKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLH 174
Query: 362 VRCPAYISLGSRGNGVFVGENNAVKYQVVQRCSVSV 255
V+CPAYI+ G++ NGV VG+ NAVKY CSVSV
Sbjct: 175 VKCPAYINFGNKANGVIVGD-NAVKYTFTTSCSVSV 209
>ref|NP_181140.1| hairpin-induced protein, putative (HIN1); protein id: At2g35960.1,
supported by cDNA: 19481. [Arabidopsis thaliana]
gi|25354577|pir||B84775 probable harpin-induced protein
[imported] - Arabidopsis thaliana
gi|4510373|gb|AAD21461.1| putative harpin-induced
protein [Arabidopsis thaliana]
gi|21554028|gb|AAM63109.1| putative harpin-induced
protein [Arabidopsis thaliana]
Length = 210
Score = 125 bits (315), Expect = 3e-28
Identities = 57/96 (59%), Positives = 74/96 (76%)
Frame = -1
Query: 542 HKEFDVWSPFVSGNSVPVAPFNFVGLGQDQANGNVFITVKVDGRVRWKVGAFVSGRYHLY 363
HKE +VWSPFV GNSVP+APFN V LG +Q G V + ++ DGRVRWKVG ++G+YHL+
Sbjct: 116 HKEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLH 175
Query: 362 VRCPAYISLGSRGNGVFVGENNAVKYQVVQRCSVSV 255
VRC A+I+L + GV VGE NAVKY ++ +CSV+V
Sbjct: 176 VRCQAFINLADKAAGVHVGE-NAVKYMLINKCSVNV 210
>ref|NP_190815.1| hairpin-induced protein, putative (HIN1); protein id: At3g52470.1,
supported by cDNA: 92178., supported by cDNA:
gi_19423891, supported by cDNA: gi_21281063 [Arabidopsis
thaliana] gi|7486002|pir||T08452 hypothetical protein
F22O6.150 - Arabidopsis thaliana
gi|4886280|emb|CAB43430.1| putative protein [Arabidopsis
thaliana] gi|19423892|gb|AAL87268.1| unknown protein
[Arabidopsis thaliana] gi|21281064|gb|AAM45089.1|
unknown protein [Arabidopsis thaliana]
gi|21617965|gb|AAM67015.1| putative harpin-induced
protein [Arabidopsis thaliana]
Length = 208
Score = 115 bits (287), Expect = 4e-25
Identities = 50/96 (52%), Positives = 73/96 (75%)
Frame = -1
Query: 542 HKEFDVWSPFVSGNSVPVAPFNFVGLGQDQANGNVFITVKVDGRVRWKVGAFVSGRYHLY 363
HKE +VWSPFV G +VP+AP+N V LG+++ G V + ++ DG VRWKV ++G+YH++
Sbjct: 114 HKEVNVWSPFVYGTAVPIAPYNSVALGEEKDRGFVGLMIRADGTVRWKVRTLITGKYHIH 173
Query: 362 VRCPAYISLGSRGNGVFVGENNAVKYQVVQRCSVSV 255
VRC A+I+LG++ GV VG+ NAVKY + +CSV+V
Sbjct: 174 VRCQAFINLGNKAAGVLVGD-NAVKYTLANKCSVNV 208
>ref|NP_196251.1| hairpin-induced protein, putative (HIN1); protein id: At5g06330.1
[Arabidopsis thaliana] gi|9758413|dbj|BAB08955.1|
harpin-induced protein-like [Arabidopsis thaliana]
Length = 207
Score = 113 bits (282), Expect = 2e-24
Identities = 53/96 (55%), Positives = 69/96 (71%)
Frame = -1
Query: 542 HKEFDVWSPFVSGNSVPVAPFNFVGLGQDQANGNVFITVKVDGRVRWKVGAFVSGRYHLY 363
HKE +VWSPFV G SVPVAP+N L QD ++G + + + +DGRVRWKVG+F++G+YHL+
Sbjct: 117 HKEVNVWSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLH 176
Query: 362 VRCPAYISLGSRGNGVFVGENNAVKYQVVQRCSVSV 255
VRC A I+ GS GV VG KY + + CSVSV
Sbjct: 177 VRCHALINFGSSAAGVIVG-----KYMLTETCSVSV 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,651,227
Number of Sequences: 1393205
Number of extensions: 10220771
Number of successful extensions: 24806
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 23600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24683
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
