Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001751A_C01 KMC001751A_c01
(850 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194843.1| glycosyl hydrolase family 17; protein id: At4g3... 172 6e-42
gb|AAL24251.1| AT5g58090/k21l19_70 [Arabidopsis thaliana] gi|233... 145 7e-34
ref|NP_200617.2| glycosyl hydrolase family 17; protein id: At5g5... 145 7e-34
gb|AAF05860.1|AC011698_11 putative beta-1,3-glucanase [Arabidops... 120 3e-26
ref|NP_187051.2| glycosyl hydrolase family 17; protein id: At3g0... 120 3e-26
>ref|NP_194843.1| glycosyl hydrolase family 17; protein id: At4g31140.1 [Arabidopsis
thaliana] gi|7486497|pir||T10668 hypothetical protein
F6E21.60 - Arabidopsis thaliana
gi|7270016|emb|CAB79832.1| 1, 3-beta-glucanase-like
protein [Arabidopsis thaliana]
Length = 484
Score = 172 bits (436), Expect = 6e-42
Identities = 85/144 (59%), Positives = 112/144 (77%), Gaps = 4/144 (2%)
Frame = -1
Query: 850 QLSMGSRNNALVGATGVAYLAKKWCIMKPSANLNNDQLAPSVSYACSHADCTSLGYGTSC 671
QLS+GS N L+ A V YLAKKWCI+ P+ANL + QL PSVSYAC HADCTSLGYG+SC
Sbjct: 343 QLSLGS-GNGLIPAKDVHYLAKKWCILAPNANLQDPQLGPSVSYACDHADCTSLGYGSSC 401
Query: 670 GNLDIHGNISYAFNSYFQINDQIDSACKFPGGLSVVTDRDPSIGDCKFKIMIQTDSA--- 500
GNL++ N+SYAFNSY+Q+++Q+DSACKFP GLS+V+ RDPS+G CKFKIMI+++ A
Sbjct: 402 GNLNLAQNVSYAFNSYYQVSNQLDSACKFP-GLSIVSTRDPSVGSCKFKIMIKSEDASEA 460
Query: 499 -VTYGNGRIWSLRIVLSVFLFLVL 431
R ++ ++LS+ L++VL
Sbjct: 461 SAMMPITRSTAVLLLLSICLYIVL 484
>gb|AAL24251.1| AT5g58090/k21l19_70 [Arabidopsis thaliana]
gi|23308419|gb|AAN18179.1| At5g58090/k21l19_70
[Arabidopsis thaliana]
Length = 477
Score = 145 bits (366), Expect = 7e-34
Identities = 70/113 (61%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Frame = -1
Query: 847 LSMGSRNN-ALVGATGVAYLAKKWCIMKPSANLNNDQLAPSVSYACSHADCTSLGYGTSC 671
L++G+ N AL+ A GV YL +KWC+MKP+ L++ Q+AP+VSYACS DCTSLG GTSC
Sbjct: 339 LNLGTTNTGALIQAKGVRYLERKWCVMKPNVRLDDPQVAPAVSYACSLGDCTSLGVGTSC 398
Query: 670 GNLDIHGNISYAFNSYFQINDQIDSACKFPGGLSVVTDRDPSIGDCKFKIMIQ 512
NLD NISYAFNSY+QI DQ+D+ACKFP +S VT DPS G C+F IMI+
Sbjct: 399 ANLDGKQNISYAFNSYYQIQDQLDTACKFP-NISEVTKTDPSTGTCRFPIMIE 450
>ref|NP_200617.2| glycosyl hydrolase family 17; protein id: At5g58090.1, supported by
cDNA: gi_16604490 [Arabidopsis thaliana]
gi|9759535|dbj|BAB11001.1| glucanase; glucan
endo-1,3-beta-glucosidase [Arabidopsis thaliana]
Length = 477
Score = 145 bits (366), Expect = 7e-34
Identities = 70/113 (61%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Frame = -1
Query: 847 LSMGSRNN-ALVGATGVAYLAKKWCIMKPSANLNNDQLAPSVSYACSHADCTSLGYGTSC 671
L++G+ N AL+ A GV YL +KWC+MKP+ L++ Q+AP+VSYACS DCTSLG GTSC
Sbjct: 339 LNLGTTNTGALIQAKGVRYLERKWCVMKPNVRLDDPQVAPAVSYACSLGDCTSLGVGTSC 398
Query: 670 GNLDIHGNISYAFNSYFQINDQIDSACKFPGGLSVVTDRDPSIGDCKFKIMIQ 512
NLD NISYAFNSY+QI DQ+D+ACKFP +S VT DPS G C+F IMI+
Sbjct: 399 ANLDGKQNISYAFNSYYQIQDQLDTACKFP-NISEVTKTDPSTGTCRFPIMIE 450
>gb|AAF05860.1|AC011698_11 putative beta-1,3-glucanase [Arabidopsis thaliana]
Length = 491
Score = 120 bits (301), Expect = 3e-26
Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Frame = -1
Query: 820 LVGATGVAYLAKKWCIMKPSANLNNDQLAPSVSYACSHADCTSLGYGTSCGNLDIHGNIS 641
L GA V Y +WC+ P+ N +L +++YACSH+DCT+LGYG+SCGNLD +GN S
Sbjct: 361 LTGAQNVQYFLNQWCMFNPNGRGNMSRLGDNINYACSHSDCTALGYGSSCGNLDANGNAS 420
Query: 640 YAFNSYFQINDQIDSACKFPGGLSVVTDRDPSIGDCKFKIMIQTDSA--VTYGNGRIWSL 467
YAFN YFQ+ +Q AC F GL+ +T ++ S G C F I I S+ Y G + L
Sbjct: 421 YAFNMYFQVQNQEAQACDFE-GLATITTQNISQGQCNFPIQIGEPSSGHYDYSYGSMVRL 479
Query: 466 RIVLSVFLFLVL 431
+V+S +FL++
Sbjct: 480 CLVMSGLVFLLI 491
>ref|NP_187051.2| glycosyl hydrolase family 17; protein id: At3g04010.1 [Arabidopsis
thaliana]
Length = 452
Score = 120 bits (301), Expect = 3e-26
Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Frame = -1
Query: 820 LVGATGVAYLAKKWCIMKPSANLNNDQLAPSVSYACSHADCTSLGYGTSCGNLDIHGNIS 641
L GA V Y +WC+ P+ N +L +++YACSH+DCT+LGYG+SCGNLD +GN S
Sbjct: 322 LTGAQNVQYFLNQWCMFNPNGRGNMSRLGDNINYACSHSDCTALGYGSSCGNLDANGNAS 381
Query: 640 YAFNSYFQINDQIDSACKFPGGLSVVTDRDPSIGDCKFKIMIQTDSA--VTYGNGRIWSL 467
YAFN YFQ+ +Q AC F GL+ +T ++ S G C F I I S+ Y G + L
Sbjct: 382 YAFNMYFQVQNQEAQACDFE-GLATITTQNISQGQCNFPIQIGEPSSGHYDYSYGSMVRL 440
Query: 466 RIVLSVFLFLVL 431
+V+S +FL++
Sbjct: 441 CLVMSGLVFLLI 452
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 718,002,126
Number of Sequences: 1393205
Number of extensions: 15673811
Number of successful extensions: 35454
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 33780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35336
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44594917920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
