Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001733A_C01 KMC001733A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_705048.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.54
ref|NP_567205.1| contains similarity to gag proteins; protein id... 33 2.1
dbj|BAC42619.1| unknown protein [Arabidopsis thaliana] gi|290288... 33 2.1
gb|ZP_00111270.1| hypothetical protein [Nostoc punctiforme] 31 7.9
ref|NP_501784.1| Putative membrane protein family member, with a... 31 7.9
>ref|NP_705048.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615293|emb|CAD52284.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1205
Score = 35.0 bits (79), Expect = 0.54
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = -1
Query: 264 FHVSLLSEHFFSLFNTHLTIP---THTNN*QIINNRRCDQLSFLHTHSIVSF 118
+++ LL+EHF S +H+ I ++NN I NN + Q + ++TH + F
Sbjct: 1110 YNIKLLAEHFKSYVESHIKIKINKNYSNNNVISNNNKTTQNNTINTHEYLKF 1161
>ref|NP_567205.1| contains similarity to gag proteins; protein id: At4g00980.1
[Arabidopsis thaliana] gi|7485280|pir||T01549
hypothetical protein A_TM018A10.1 - Arabidopsis thaliana
gi|2252849|gb|AAB62847.1| contains similarity to gag
proteins [Arabidopsis thaliana]
gi|7267595|emb|CAB80907.1| contains similarity to gag
proteins~similarity to~Contains TonB-dependent receptor
proteins signatures AA1-6~contains EST gb:AI994181.1,
T45472, AI994919.1 [Arabidopsis thaliana]
Length = 462
Score = 33.1 bits (74), Expect = 2.1
Identities = 29/88 (32%), Positives = 39/88 (43%), Gaps = 1/88 (1%)
Frame = -2
Query: 344 DGDWYLK-QRQFAQFLRQLAYNHVSPLTSMCPFFLNTSSPSSTPI*QFQHTQTTNKL*TT 168
DG YL Q FL+QL +V L+ CP ++ P + P + T K
Sbjct: 173 DGKSYLYWASQMELFLKQLKLTYV--LSEPCPSIGSSQGPETNPR-EITRADATGKKWLR 229
Query: 167 EDVTNYLSYTHTL*SLFVVLLQDYMAKF 84
+D YL YTH + SL L + Y KF
Sbjct: 230 DD---YLCYTHLMNSLSDHLYRRYSQKF 254
>dbj|BAC42619.1| unknown protein [Arabidopsis thaliana] gi|29028884|gb|AAO64821.1|
At4g00980 [Arabidopsis thaliana]
Length = 488
Score = 33.1 bits (74), Expect = 2.1
Identities = 29/88 (32%), Positives = 39/88 (43%), Gaps = 1/88 (1%)
Frame = -2
Query: 344 DGDWYLK-QRQFAQFLRQLAYNHVSPLTSMCPFFLNTSSPSSTPI*QFQHTQTTNKL*TT 168
DG YL Q FL+QL +V L+ CP ++ P + P + T K
Sbjct: 199 DGKSYLYWASQMELFLKQLKLTYV--LSEPCPSIGSSQGPETNPR-EITRADATGKKWLR 255
Query: 167 EDVTNYLSYTHTL*SLFVVLLQDYMAKF 84
+D YL YTH + SL L + Y KF
Sbjct: 256 DD---YLCYTHLMNSLSDHLYRRYSQKF 280
>gb|ZP_00111270.1| hypothetical protein [Nostoc punctiforme]
Length = 210
Score = 31.2 bits (69), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Frame = -2
Query: 368 LKGVVVIEDGDWYLKQRQFAQFLR---------QLAYNHVSPLTSMCPFFLNTSSPSSTP 216
L+G+ VI D Y +Q Q + Q+AYNH+S CP ++ TP
Sbjct: 125 LQGIKVIRSKDTYFSSQQPRQQVTLAPGKQASFQIAYNHISSPQENCPI---SNKIEITP 181
Query: 215 I*QFQHTQTTNKL 177
+QH T ++
Sbjct: 182 PNAYQHLTVTEEI 194
>ref|NP_501784.1| Putative membrane protein family member, with a transmembrane
domain, of bilaterial origin [Caenorhabditis elegans]
gi|6137288|sp|O45435|YV4Q_CAEEL Hypothetical protein
F32B6.9 in chromosome IV gi|7500332|pir||T21644
hypothetical protein F32B6.9 - Caenorhabditis elegans
gi|3876567|emb|CAB03043.1| Hypothetical protein F32B6.9
[Caenorhabditis elegans]
Length = 413
Score = 31.2 bits (69), Expect = 7.9
Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 3/48 (6%)
Frame = -2
Query: 374 FYLKGVVVIED--GDWYLKQRQFAQFLRQL-AYNHVSPLTSMCPFFLN 240
FYLKG+ +I+D D +R F F RQ +Y + PLT + F+++
Sbjct: 41 FYLKGIDLIDDDEDDRLKMRRMFETFCRQCDSYTRLIPLTFLLGFYVS 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,695,482
Number of Sequences: 1393205
Number of extensions: 9110512
Number of successful extensions: 21969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21917
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
