Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001727A_C01 KMC001727A_c01
(773 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565378.1| unknown protein; protein id: At2g15695.1 [Arabi... 38 0.18
pir||B84532 hypothetical protein At2g15690 [imported] - Arabidop... 34 2.0
ref|XP_152979.1| hypothetical protein XP_152979 [Mus musculus] 33 4.6
gb|AAK16477.1| DraC [Escherichia coli] 32 7.8
gb|AAK17181.1|AF325672_3 DafaC [Escherichia coli] 32 7.8
>ref|NP_565378.1| unknown protein; protein id: At2g15695.1 [Arabidopsis thaliana]
gi|20197706|gb|AAM15216.1| unknown protein [Arabidopsis
thaliana]
Length = 420
Score = 37.7 bits (86), Expect = 0.18
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Frame = -3
Query: 768 CVPKNVDGWDVKFSG-----NRLCASASRHSPLRGIKRIGRSRL 652
CVPKN++GWD++F+G +S+ ++S L KR RSRL
Sbjct: 377 CVPKNIEGWDIRFAGCLNGQPYATSSSRKNSNLGFKKRFFRSRL 420
>pir||B84532 hypothetical protein At2g15690 [imported] - Arabidopsis thaliana
Length = 989
Score = 34.3 bits (77), Expect = 2.0
Identities = 10/15 (66%), Positives = 15/15 (99%)
Frame = -3
Query: 768 CVPKNVDGWDVKFSG 724
CVPKN++GWD++F+G
Sbjct: 365 CVPKNIEGWDIRFAG 379
>ref|XP_152979.1| hypothetical protein XP_152979 [Mus musculus]
Length = 565
Score = 33.1 bits (74), Expect = 4.6
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +2
Query: 545 PLPDPLLHQNPSY----LGKLQMFQTYLP*SISLGQMRTYNLERPMRLIPLKG 691
PLP P++ P++ +G L + + Y+ S+ L Q+ + L P L+P+KG
Sbjct: 505 PLPPPVVPPPPTHCTFPVGHLDLAEAYMRSSLCLPQLHSRGLRIPSLLLPVKG 557
>gb|AAK16477.1| DraC [Escherichia coli]
Length = 859
Score = 32.3 bits (72), Expect = 7.8
Identities = 20/64 (31%), Positives = 27/64 (41%), Gaps = 6/64 (9%)
Frame = -2
Query: 568 MQQWVWQWKYGGCNGSTNSFSAQSHMDKDYLSF------ISSEINWCHTERRLLYYP*K* 407
+ Q + QW Y G NGS + + + H D S+ IS +NW YY
Sbjct: 512 LSQSLGQWGYVGLNGSRDEYRDRPHRDYFGASYSTSWNNISLSVNWSRNRNSGGYY---- 567
Query: 406 SGWS 395
GWS
Sbjct: 568 GGWS 571
>gb|AAK17181.1|AF325672_3 DafaC [Escherichia coli]
Length = 859
Score = 32.3 bits (72), Expect = 7.8
Identities = 20/64 (31%), Positives = 27/64 (41%), Gaps = 6/64 (9%)
Frame = -2
Query: 568 MQQWVWQWKYGGCNGSTNSFSAQSHMDKDYLSF------ISSEINWCHTERRLLYYP*K* 407
+ Q + QW Y G NGS + + + H D S+ IS +NW YY
Sbjct: 512 LSQSLGQWGYVGLNGSRDEYRDRPHRDYFGASYSTSWNNISLSVNWSRNRNSGGYY---- 567
Query: 406 SGWS 395
GWS
Sbjct: 568 GGWS 571
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 678,269,087
Number of Sequences: 1393205
Number of extensions: 14769168
Number of successful extensions: 42459
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 40931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42431
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
