Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001723A_C01 KMC001723A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196063.1| KH domain protein Nova, putative; protein id: A... 144 1e-33
pir||S42933 hypothetical protein 1087 - maize gi|459269|emb|CAA5... 124 8e-28
gb|AAB88661.1| astrocytic NOVA-like RNA-binding protein [Homo sa... 71 1e-11
gb|AAD13116.1|AAD13116 RNA-binding protein Nova-2 [AA 29-492]; a... 71 1e-11
ref|NP_002507.1| neuro-oncological ventral antigen 2; neuro-onco... 71 1e-11
>ref|NP_196063.1| KH domain protein Nova, putative; protein id: At5g04430.1,
supported by cDNA: 25769., supported by cDNA:
gi_14030640 [Arabidopsis thaliana]
gi|11358673|pir||T48439 probable RNA-binding protein -
Arabidopsis thaliana gi|7406447|emb|CAB85549.1| putative
RNA-binding protein [Arabidopsis thaliana]
gi|14030641|gb|AAK52995.1|AF375411_1 AT5g04430/T32M21_30
[Arabidopsis thaliana] gi|21554568|gb|AAM63617.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|23507775|gb|AAN38691.1| At5g04430/T32M21_30
[Arabidopsis thaliana]
Length = 313
Score = 144 bits (362), Expect = 1e-33
Identities = 68/99 (68%), Positives = 87/99 (87%)
Frame = -3
Query: 635 NYRSNGAGGKFQNSKEERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGD 456
NY NG+GGK+QN KEE S ++TIGVAD+H+GLV+GRGG+NIM+I+Q++GA+IKISDRGD
Sbjct: 215 NYAPNGSGGKYQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGD 274
Query: 455 YISGTTDRKVTITGSQRAIRTAESMIVQKVAYATERVVE 339
++SGTTDRKV+ITG QRAI+ AE+MI QKV ATER +
Sbjct: 275 FMSGTTDRKVSITGPQRAIQQAETMIKQKVDSATERTTD 313
Score = 47.8 bits (112), Expect = 1e-04
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = -3
Query: 587 ERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRKVTITGSQ 408
E+ + V++ G V+G+GG I + SGA+I++S ++ GTTDR + I+GS
Sbjct: 32 EKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSI 91
Query: 407 RAIRTAESMIVQKV 366
+ + +I+ K+
Sbjct: 92 KEVVNGLELILDKL 105
Score = 36.2 bits (82), Expect = 0.37
Identities = 22/74 (29%), Positives = 37/74 (49%)
Frame = -3
Query: 587 ERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRKVTITGSQ 408
E + + V + G ++G+GG I + S A IKIS + G +DR VT++G+
Sbjct: 118 EPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTF 177
Query: 407 RAIRTAESMIVQKV 366
A +I+ K+
Sbjct: 178 EEQMRAIDLILAKL 191
>pir||S42933 hypothetical protein 1087 - maize gi|459269|emb|CAA54960.1|
transcribed sequence 1087 [Zea mays]
Length = 228
Score = 124 bits (312), Expect = 8e-28
Identities = 63/103 (61%), Positives = 80/103 (77%), Gaps = 10/103 (9%)
Frame = -3
Query: 626 SNGAGGKFQNSK----------EERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKI 477
+NG GG++QN+K E SLTIG+AD+H+G VVGR G+NI +I Q SGA+I
Sbjct: 126 NNGYGGRYQNNKPTTPMRSPASNEAQESLTIGIADEHIGAVVGRAGRNITEIIQASGARI 185
Query: 476 KISDRGDYISGTTDRKVTITGSQRAIRTAESMIVQKVAYATER 348
KISDRGDYISGT+DRKVTITG+ AIRTAESMI+Q+V+ ++ER
Sbjct: 186 KISDRGDYISGTSDRKVTITGTPEAIRTAESMIMQRVSASSER 228
Score = 38.1 bits (87), Expect = 0.098
Identities = 23/66 (34%), Positives = 36/66 (53%)
Frame = -3
Query: 560 VADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRKVTITGSQRAIRTAESM 381
V + G ++G+GG I + S A IKIS + + G DR VTITG+ A +
Sbjct: 15 VPNSSCGGIIGKGGATIKSFIEESHAGIKISPQDNNYVGLHDRLVTITGTFDNQMNAIDL 74
Query: 380 IVQKVA 363
I++K++
Sbjct: 75 ILKKLS 80
>gb|AAB88661.1| astrocytic NOVA-like RNA-binding protein [Homo sapiens]
Length = 498
Score = 71.2 bits (173), Expect = 1e-11
Identities = 34/91 (37%), Positives = 62/91 (67%), Gaps = 4/91 (4%)
Frame = -3
Query: 620 GAGGKFQNSKEERSNS----LTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDY 453
GA G F +++ + S + I V ++ VG ++G+GGK +++ +++GA+I+IS +G++
Sbjct: 395 GAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 454
Query: 452 ISGTTDRKVTITGSQRAIRTAESMIVQKVAY 360
+ GT +R+VTITGS A + A+ +I Q+V Y
Sbjct: 455 LPGTRNRRVTITGSPAATQAAQYLISQRVTY 485
Score = 53.1 bits (126), Expect = 3e-06
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = -3
Query: 608 KFQNSKEERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRK 429
K N+ EE L + + G ++G+GG+ I+ + + +GA IK+S D+ GTT+R
Sbjct: 29 KRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 88
Query: 428 VTITGSQRAIRTAESMIVQKV 366
+ G+ A+ S I +KV
Sbjct: 89 CLVQGTAEALNAVHSFIAEKV 109
Score = 44.7 bits (104), Expect = 0.001
Identities = 23/74 (31%), Positives = 43/74 (58%)
Frame = -3
Query: 587 ERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRKVTITGSQ 408
+R+ + V + GL++G+GG + + + SGA +++S + + I+ +R VT++G
Sbjct: 134 DRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGIN-LQERVVTVSGEP 192
Query: 407 RAIRTAESMIVQKV 366
+ A S IVQKV
Sbjct: 193 EQVHKAVSAIVQKV 206
>gb|AAD13116.1|AAD13116 RNA-binding protein Nova-2 [AA 29-492]; astrocytic NOVA-like
RNA-binding protein [Homo sapiens]
Length = 464
Score = 71.2 bits (173), Expect = 1e-11
Identities = 34/91 (37%), Positives = 62/91 (67%), Gaps = 4/91 (4%)
Frame = -3
Query: 620 GAGGKFQNSKEERSNS----LTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDY 453
GA G F +++ + S + I V ++ VG ++G+GGK +++ +++GA+I+IS +G++
Sbjct: 361 GAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 420
Query: 452 ISGTTDRKVTITGSQRAIRTAESMIVQKVAY 360
+ GT +R+VTITGS A + A+ +I Q+V Y
Sbjct: 421 LPGTRNRRVTITGSPAATQAAQYLISQRVTY 451
Score = 50.4 bits (119), Expect = 2e-05
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = -3
Query: 590 EERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRKVTITGS 411
EE L + + G ++G+GG+ I+ + + +GA IK+S D+ GTT+R + G+
Sbjct: 1 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGT 60
Query: 410 QRAIRTAESMIVQKV 366
A+ S I +KV
Sbjct: 61 AEALNAVHSFIAEKV 75
Score = 44.7 bits (104), Expect = 0.001
Identities = 23/74 (31%), Positives = 43/74 (58%)
Frame = -3
Query: 587 ERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRKVTITGSQ 408
+R+ + V + GL++G+GG + + + SGA +++S + + I+ +R VT++G
Sbjct: 100 DRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGIN-LQERVVTVSGEP 158
Query: 407 RAIRTAESMIVQKV 366
+ A S IVQKV
Sbjct: 159 EQVHKAVSAIVQKV 172
>ref|NP_002507.1| neuro-oncological ventral antigen 2; neuro-oncological ventral
antigen 3 [Homo sapiens] gi|3851553|gb|AAC72355.1|
RNA-binding protein Nova-2 [Homo sapiens]
Length = 492
Score = 71.2 bits (173), Expect = 1e-11
Identities = 34/91 (37%), Positives = 62/91 (67%), Gaps = 4/91 (4%)
Frame = -3
Query: 620 GAGGKFQNSKEERSNS----LTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDY 453
GA G F +++ + S + I V ++ VG ++G+GGK +++ +++GA+I+IS +G++
Sbjct: 389 GAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF 448
Query: 452 ISGTTDRKVTITGSQRAIRTAESMIVQKVAY 360
+ GT +R+VTITGS A + A+ +I Q+V Y
Sbjct: 449 LPGTRNRRVTITGSPAATQAAQYLISQRVTY 479
Score = 53.1 bits (126), Expect = 3e-06
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = -3
Query: 608 KFQNSKEERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRK 429
K N+ EE L + + G ++G+GG+ I+ + + +GA IK+S D+ GTT+R
Sbjct: 23 KRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 82
Query: 428 VTITGSQRAIRTAESMIVQKV 366
+ G+ A+ S I +KV
Sbjct: 83 CLVQGTAEALNAVHSFIAEKV 103
Score = 44.7 bits (104), Expect = 0.001
Identities = 23/74 (31%), Positives = 43/74 (58%)
Frame = -3
Query: 587 ERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRKVTITGSQ 408
+R+ + V + GL++G+GG + + + SGA +++S + + I+ +R VT++G
Sbjct: 128 DRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGIN-LQERVVTVSGEP 186
Query: 407 RAIRTAESMIVQKV 366
+ A S IVQKV
Sbjct: 187 EQVHKAVSAIVQKV 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,593,471
Number of Sequences: 1393205
Number of extensions: 12091631
Number of successful extensions: 32818
Number of sequences better than 10.0: 314
Number of HSP's better than 10.0 without gapping: 31257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32726
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
