Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001714A_C01 KMC001714A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22685.1| unknown protein [Arabidopsis thaliana] gi|2839402... 62 3e-09
ref|NP_199585.1| unknown protein; protein id: At5g47740.1 [Arabi... 62 3e-09
ref|NP_680448.1| similar to putative protein kinase; protein id:... 36 0.32
pir||E86147 T1N6.4 protein - Arabidopsis thaliana gi|8671834|gb|... 33 1.6
ref|NP_196761.1| putative receptor - like kinase; protein id: At... 33 1.6
>gb|AAO22685.1| unknown protein [Arabidopsis thaliana] gi|28394029|gb|AAO42422.1|
unknown protein [Arabidopsis thaliana]
Length = 244
Score = 62.4 bits (150), Expect = 3e-09
Identities = 36/88 (40%), Positives = 59/88 (66%), Gaps = 8/88 (9%)
Frame = -3
Query: 525 ILQIRKLVIGTNKSQLRKLRSKKGNSMADQILQ-NAPESCKVRIICEGEEVN-QQTANDT 352
IL IRKLV+G +KS RK + KGNS+ + I++ +A + C+V++IC+G+E+N +QT ++
Sbjct: 152 ILNIRKLVLGIDKSNARKASTMKGNSVPELIMRSSAADVCEVKVICQGKEINMEQTMMES 211
Query: 351 S------MSHKEEDQKNDWFSSLSCICF 286
S + +++DQ D F +CICF
Sbjct: 212 SPAKSPIVQRQKKDQPVDPF---ACICF 236
>ref|NP_199585.1| unknown protein; protein id: At5g47740.1 [Arabidopsis thaliana]
gi|10177910|dbj|BAB11321.1| gene_id:MCA23.6~unknown
protein [Arabidopsis thaliana]
Length = 174
Score = 62.4 bits (150), Expect = 3e-09
Identities = 36/88 (40%), Positives = 59/88 (66%), Gaps = 8/88 (9%)
Frame = -3
Query: 525 ILQIRKLVIGTNKSQLRKLRSKKGNSMADQILQ-NAPESCKVRIICEGEEVN-QQTANDT 352
IL IRKLV+G +KS RK + KGNS+ + I++ +A + C+V++IC+G+E+N +QT ++
Sbjct: 82 ILNIRKLVLGIDKSNARKASTMKGNSVPELIMRSSAADVCEVKVICQGKEINMEQTMMES 141
Query: 351 S------MSHKEEDQKNDWFSSLSCICF 286
S + +++DQ D F +CICF
Sbjct: 142 SPAKSPIVQRQKKDQPVDPF---ACICF 166
>ref|NP_680448.1| similar to putative protein kinase; protein id: At5g57035.1
[Arabidopsis thaliana]
Length = 786
Score = 35.8 bits (81), Expect = 0.32
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 4/57 (7%)
Frame = -3
Query: 507 LVIGTNKSQLRKLRSKKGNSMADQILQNAPESCKVRIICEG----EEVNQQTANDTS 349
LVIG+ S L KKG M +L APE+C++ ++C+ + NQ TA+ +S
Sbjct: 136 LVIGSCSSNF--LTRKKGQEMPLTVLGEAPETCEIYVVCKDRILTKSTNQFTADSSS 190
>pir||E86147 T1N6.4 protein - Arabidopsis thaliana
gi|8671834|gb|AAF78397.1|AC009273_3 Contains similarity
to a putative protein T2J13.100 gi|6522560 from
Arabidopsis thaliana BAC T2J13 gb|AL132967
Length = 952
Score = 33.5 bits (75), Expect = 1.6
Identities = 26/86 (30%), Positives = 43/86 (49%), Gaps = 9/86 (10%)
Frame = -3
Query: 519 QIRKLVIGTNKS-----QLRKLRSKKGNSMADQILQNAPESCKVRIICEGEEVNQQTAN- 358
+I+KLV+G ++ L+S+K A + Q+AP SC+V +C+G + + AN
Sbjct: 484 KIKKLVMGAASDHHYSEKMFDLKSRK----AKYVYQHAPSSCEVMFMCDGHLIYTKEANL 539
Query: 357 DTSMSHKEED---QKNDWFSSLSCIC 289
+ M E + K +SS S C
Sbjct: 540 EDCMGETESEAGQSKPKLYSSASPKC 565
>ref|NP_196761.1| putative receptor - like kinase; protein id: At5g12000.1
[Arabidopsis thaliana] gi|11358669|pir||T48559 probable
receptor-like kinase - Arabidopsis thaliana
gi|7573367|emb|CAB87673.1| putative receptor-like kinase
[Arabidopsis thaliana]
Length = 703
Score = 33.5 bits (75), Expect = 1.6
Identities = 16/54 (29%), Positives = 31/54 (56%), Gaps = 2/54 (3%)
Frame = -3
Query: 516 IRKLVIGTNKSQ--LRKLRSKKGNSMADQILQNAPESCKVRIICEGEEVNQQTA 361
+ LV+G++ R L+ K + +A +L++ PE C V +I +G+ + +TA
Sbjct: 109 VTNLVLGSSSKSPFARSLKFTKSHDVASSVLKSTPEFCSVYVISKGKVHSSRTA 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,007,407
Number of Sequences: 1393205
Number of extensions: 7474184
Number of successful extensions: 15126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15119
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
