Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001708A_C01 KMC001708A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64349.1| 26S proteasome non-ATPase regulatory subunit [Ara... 158 3e-46
ref|NP_197745.1| 26S proteasome regulatory subunit (RPN11), puta... 158 3e-46
dbj|BAA88535.1| unnamed protein product [Oryza sativa (japonica ... 152 1e-44
gb|AAH45094.1| Similar to 26S proteasome-associated pad1 homolog... 116 1e-30
ref|NP_005796.1| 26S proteasome-associated pad1 homolog [Homo sa... 116 1e-30
>gb|AAM64349.1| 26S proteasome non-ATPase regulatory subunit [Arabidopsis thaliana]
Length = 308
Score = 158 bits (399), Expect(2) = 3e-46
Identities = 78/82 (95%), Positives = 79/82 (96%)
Frame = -1
Query: 685 YSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDTHSQTNEQTVQEMLSLAVKYNKAVQ 506
YSIAINYRKNELEEKMLLNLHKKKWTDGLTL RFDTHS+TNEQTVQEMLSLA KYNKAVQ
Sbjct: 200 YSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQ 259
Query: 505 EEDELSPEKLAIANVGRQDAKK 440
EEDELSPEKLAI NVGRQDAKK
Sbjct: 260 EEDELSPEKLAIVNVGRQDAKK 281
Score = 49.7 bits (117), Expect(2) = 3e-46
Identities = 24/26 (92%), Positives = 25/26 (95%)
Frame = -3
Query: 434 LQEHVSNLMSSNIVQTLGMMLDTVVF 357
L+EHVSNLMSSNIVQTLG MLDTVVF
Sbjct: 283 LEEHVSNLMSSNIVQTLGTMLDTVVF 308
>ref|NP_197745.1| 26S proteasome regulatory subunit (RPN11), putative; protein id:
At5g23540.1, supported by cDNA: 23276., supported by
cDNA: gi_17979144, supported by cDNA: gi_20259104
[Arabidopsis thaliana] gi|8809705|dbj|BAA97246.1| 26S
proteasome, non-ATPase regulatory subunit [Arabidopsis
thaliana] gi|17979145|gb|AAL49768.1| putative 26S
proteasome, non-ATPase regulatory subunit [Arabidopsis
thaliana] gi|20259105|gb|AAM14268.1| putative 26S
proteasome, non-ATPase regulatory subunit [Arabidopsis
thaliana]
Length = 308
Score = 158 bits (399), Expect(2) = 3e-46
Identities = 78/82 (95%), Positives = 79/82 (96%)
Frame = -1
Query: 685 YSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDTHSQTNEQTVQEMLSLAVKYNKAVQ 506
YSIAINYRKNELEEKMLLNLHKKKWTDGLTL RFDTHS+TNEQTVQEMLSLA KYNKAVQ
Sbjct: 200 YSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQ 259
Query: 505 EEDELSPEKLAIANVGRQDAKK 440
EEDELSPEKLAI NVGRQDAKK
Sbjct: 260 EEDELSPEKLAIVNVGRQDAKK 281
Score = 49.7 bits (117), Expect(2) = 3e-46
Identities = 24/26 (92%), Positives = 25/26 (95%)
Frame = -3
Query: 434 LQEHVSNLMSSNIVQTLGMMLDTVVF 357
L+EHVSNLMSSNIVQTLG MLDTVVF
Sbjct: 283 LEEHVSNLMSSNIVQTLGTMLDTVVF 308
>dbj|BAA88535.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|17297983|dbj|BAB78489.1| 26S proteasome regulatory
particle non-ATPase subunit11 [Oryza sativa (japonica
cultivar-group)]
Length = 307
Score = 152 bits (385), Expect(2) = 1e-44
Identities = 75/82 (91%), Positives = 78/82 (94%)
Frame = -1
Query: 685 YSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDTHSQTNEQTVQEMLSLAVKYNKAVQ 506
YSIAINYRKNELEEKMLLNLHKKKWTDGL L FDTHS+TNEQTVQEML+LA+KYNKAVQ
Sbjct: 199 YSIAINYRKNELEEKMLLNLHKKKWTDGLILKSFDTHSKTNEQTVQEMLNLAIKYNKAVQ 258
Query: 505 EEDELSPEKLAIANVGRQDAKK 440
EEDEL PEKLAIANVGRQDAKK
Sbjct: 259 EEDELPPEKLAIANVGRQDAKK 280
Score = 49.7 bits (117), Expect(2) = 1e-44
Identities = 24/26 (92%), Positives = 25/26 (95%)
Frame = -3
Query: 434 LQEHVSNLMSSNIVQTLGMMLDTVVF 357
L+EHVSNLMSSNIVQTLG MLDTVVF
Sbjct: 282 LEEHVSNLMSSNIVQTLGTMLDTVVF 307
>gb|AAH45094.1| Similar to 26S proteasome-associated pad1 homolog [Xenopus laevis]
Length = 310
Score = 116 bits (290), Expect(2) = 1e-30
Identities = 54/82 (65%), Positives = 66/82 (79%)
Frame = -1
Query: 685 YSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDTHSQTNEQTVQEMLSLAVKYNKAVQ 506
YSI INYRKNELE+KMLLNLHKK W +GLTL + H + NE V+EML LA YNKAV+
Sbjct: 201 YSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKLNETVVKEMLELAKNYNKAVE 260
Query: 505 EEDELSPEKLAIANVGRQDAKK 440
EED+++PE+LAI NVG+QD K+
Sbjct: 261 EEDKMTPEQLAIKNVGKQDPKR 282
Score = 38.9 bits (89), Expect(2) = 1e-30
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -3
Query: 434 LQEHVSNLMSSNIVQTLGMMLDTVVF 357
L+EHV LM+SNIVQ L MLDTVVF
Sbjct: 284 LEEHVDVLMTSNIVQCLAAMLDTVVF 309
>ref|NP_005796.1| 26S proteasome-associated pad1 homolog [Homo sapiens]
gi|1923256|gb|AAC51866.1| 26S proteasome-associated pad1
homolog [Homo sapiens] gi|12848492|dbj|BAB27974.1|
unnamed protein product [Mus musculus]
gi|13277672|gb|AAH03742.1| Similar to 26S
proteasome-associated pad1 homolog [Mus musculus]
Length = 310
Score = 116 bits (290), Expect(2) = 1e-30
Identities = 54/82 (65%), Positives = 66/82 (79%)
Frame = -1
Query: 685 YSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDTHSQTNEQTVQEMLSLAVKYNKAVQ 506
YSI INYRKNELE+KMLLNLHKK W +GLTL + H + NE V+EML LA YNKAV+
Sbjct: 201 YSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVE 260
Query: 505 EEDELSPEKLAIANVGRQDAKK 440
EED+++PE+LAI NVG+QD K+
Sbjct: 261 EEDKMTPEQLAIKNVGKQDPKR 282
Score = 38.9 bits (89), Expect(2) = 1e-30
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -3
Query: 434 LQEHVSNLMSSNIVQTLGMMLDTVVF 357
L+EHV LM+SNIVQ L MLDTVVF
Sbjct: 284 LEEHVDVLMTSNIVQCLAAMLDTVVF 309
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,653,273
Number of Sequences: 1393205
Number of extensions: 10375693
Number of successful extensions: 26609
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 25789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26604
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
