Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001704A_C01 KMC001704A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194537.1| putative protein; protein id: At4g28080.1 [Arab... 59 7e-09
dbj|BAC65994.1| B1123E10.21 [Oryza sativa (japonica cultivar-gro... 54 2e-08
emb|CAB55426.1| zhb0018.1 [Oryza sativa (indica cultivar-group)] 53 3e-08
pir||B86287 F9L1.23 protein - Arabidopsis thaliana gi|5103827|gb... 52 2e-07
ref|NP_172981.1| unknown protein; protein id: At1g15290.1 [Arabi... 52 2e-07
>ref|NP_194537.1| putative protein; protein id: At4g28080.1 [Arabidopsis thaliana]
gi|7486957|pir||T02909 hypothetical protein T13J8.190 -
Arabidopsis thaliana gi|4455367|emb|CAB36777.1| putative
protein [Arabidopsis thaliana] gi|7269662|emb|CAB79610.1|
putative protein [Arabidopsis thaliana]
Length = 1791
Score = 58.5 bits (140), Expect = 4e-08
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 328 ESKALEQQEAARNGTPKPDASISSKGHL 411
ESKALEQQEAARNGTPKPDASISSKGHL
Sbjct: 1084 ESKALEQQEAARNGTPKPDASISSKGHL 1111
Score = 55.5 bits (132), Expect(2) = 7e-09
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3
Query: 81 LMEAYSLSVQHEQTTLQILQIELGSEDLRTQ 173
LM+AYSLSVQHEQTTLQILQ +LG EDLRTQ
Sbjct: 1044 LMDAYSLSVQHEQTTLQILQAKLGPEDLRTQ 1074
Score = 25.4 bits (54), Expect(2) = 7e-09
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 38 IQTAASYHAIAM 73
IQTAASYHAIA+
Sbjct: 1029 IQTAASYHAIAI 1040
>dbj|BAC65994.1| B1123E10.21 [Oryza sativa (japonica cultivar-group)]
Length = 1690
Score = 53.9 bits (128), Expect(2) = 2e-08
Identities = 26/31 (83%), Positives = 29/31 (92%)
Frame = +3
Query: 81 LMEAYSLSVQHEQTTLQILQIELGSEDLRTQ 173
LMEAYSLSVQHEQTTLQIL+ +LG +DLRTQ
Sbjct: 859 LMEAYSLSVQHEQTTLQILRAKLGPDDLRTQ 889
Score = 51.6 bits (122), Expect = 5e-06
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +1
Query: 328 ESKALEQQEAARNGTPKPDASISSKGHL 411
ESK +EQQEAARNGT KPDASI+SKGHL
Sbjct: 899 ESKVIEQQEAARNGTRKPDASIASKGHL 926
Score = 25.4 bits (54), Expect(2) = 2e-08
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 38 IQTAASYHAIAM 73
IQTAASYHAIA+
Sbjct: 844 IQTAASYHAIAI 855
>emb|CAB55426.1| zhb0018.1 [Oryza sativa (indica cultivar-group)]
Length = 943
Score = 53.1 bits (126), Expect(2) = 3e-08
Identities = 25/31 (80%), Positives = 29/31 (92%)
Frame = +3
Query: 81 LMEAYSLSVQHEQTTLQILQIELGSEDLRTQ 173
+M+AYSLSVQHEQTTLQILQ +LG +DLRTQ
Sbjct: 310 MMDAYSLSVQHEQTTLQILQEKLGQDDLRTQ 340
Score = 25.4 bits (54), Expect(2) = 3e-08
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 38 IQTAASYHAIAM 73
IQTAASYHAIA+
Sbjct: 295 IQTAASYHAIAI 306
>pir||B86287 F9L1.23 protein - Arabidopsis thaliana
gi|5103827|gb|AAD39657.1|AC007591_22 ESTs gb|F20110 and
gb|F20109 come from this gene. [Arabidopsis thaliana]
Length = 1604
Score = 51.6 bits (122), Expect = 5e-06
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +1
Query: 328 ESKALEQQEAARNGTPKPDASISSKGHL 411
ES+A+EQQEA RNG PKPDASI+SKGHL
Sbjct: 1064 ESRAIEQQEAGRNGIPKPDASIASKGHL 1091
Score = 50.4 bits (119), Expect(2) = 2e-07
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +3
Query: 84 MEAYSLSVQHEQTTLQILQIELGSEDLRTQ 173
MEA+SLSVQHEQTTLQIL +LG++DLRTQ
Sbjct: 1025 MEAHSLSVQHEQTTLQILTAKLGADDLRTQ 1054
Score = 25.4 bits (54), Expect(2) = 2e-07
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 38 IQTAASYHAIAM 73
IQTAASYHAIA+
Sbjct: 1009 IQTAASYHAIAV 1020
>ref|NP_172981.1| unknown protein; protein id: At1g15290.1 [Arabidopsis thaliana]
Length = 1558
Score = 51.6 bits (122), Expect = 5e-06
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +1
Query: 328 ESKALEQQEAARNGTPKPDASISSKGHL 411
ES+A+EQQEA RNG PKPDASI+SKGHL
Sbjct: 1018 ESRAIEQQEAGRNGIPKPDASIASKGHL 1045
Score = 50.4 bits (119), Expect(2) = 2e-07
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +3
Query: 84 MEAYSLSVQHEQTTLQILQIELGSEDLRTQ 173
MEA+SLSVQHEQTTLQIL +LG++DLRTQ
Sbjct: 979 MEAHSLSVQHEQTTLQILTAKLGADDLRTQ 1008
Score = 25.4 bits (54), Expect(2) = 2e-07
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 38 IQTAASYHAIAM 73
IQTAASYHAIA+
Sbjct: 963 IQTAASYHAIAV 974
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,992,536
Number of Sequences: 1393205
Number of extensions: 9625739
Number of successful extensions: 39169
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 20386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28123
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
