Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001701A_C01 KMC001701A_c01
(449 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA19374.1| hypothetical protein [Plasmodium yoelii yoelii] 36 0.12
gb|EAA16006.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.16
ref|NP_704382.1| asparagine-rich antigen [Plasmodium falciparum ... 33 0.79
ref|NP_701167.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.0
pir||T44051 hypothetical protein U95 [imported] - human herpesvi... 32 1.3
>gb|EAA19374.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 805
Score = 35.8 bits (81), Expect = 0.12
Identities = 25/91 (27%), Positives = 44/91 (47%)
Frame = +1
Query: 100 SYRQNEAYNENELK*FYTN*TKTGKNADLGSLLHIREQSSHSN*AHLNNSLT*TSSCNAK 279
SY QN + EL + + +T +NAD+G + QS+ N ++ N + + N
Sbjct: 384 SYGQNNMHKNEELN-YLSEQEQTEENADVGEMTKTEIQSTEGNIDNIQNVRSIYNLSNIN 442
Query: 280 HNPVQQNHLPTYP*HFHLKNHKKYLNSNQNL 372
HN ++ N + + HL +H Y+ N N+
Sbjct: 443 HNNLKINSM--HDNFSHLNDHNVYM-PNDNM 470
>gb|EAA16006.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 535
Score = 35.4 bits (80), Expect = 0.16
Identities = 25/91 (27%), Positives = 43/91 (46%)
Frame = +1
Query: 100 SYRQNEAYNENELK*FYTN*TKTGKNADLGSLLHIREQSSHSN*AHLNNSLT*TSSCNAK 279
SY QN + EL + + +T +NAD+G + QS+ N ++ N + + N
Sbjct: 96 SYGQNNMHKNEELN-YLSEQEQTEENADVGEMTKTEIQSTEGNIDNIQNVRSIYNLSNXN 154
Query: 280 HNPVQQNHLPTYP*HFHLKNHKKYLNSNQNL 372
HN ++ N + HL +H Y+ N N+
Sbjct: 155 HNNLKIN--SXHDNFSHLNDHNVYM-PNDNM 182
>ref|NP_704382.1| asparagine-rich antigen [Plasmodium falciparum 3D7]
gi|23499121|emb|CAD51201.1| asparagine-rich antigen
[Plasmodium falciparum 3D7]
Length = 2235
Score = 33.1 bits (74), Expect = 0.79
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Frame = +1
Query: 223 SN*AHLNNSLT*TSSCNAKHNPVQQNHLPTYP*----HFHLKNHKKYLNSNQNL--N*KH 384
+N + LNN+ T +S N HN N+ P + + KNH YLNSN N + K
Sbjct: 816 NNNSDLNNNNTAATSNNNTHNNNNNNNSNYNPYFMNNYMNSKNHPLYLNSNNNYGNDIKM 875
Query: 385 KIIPKAL-----ANSCTMHGTSC 438
KI+P + A G+SC
Sbjct: 876 KILPPYMHHFNKAMKIIPEGSSC 898
>ref|NP_701167.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496232|gb|AAN35891.1|AE014840_39 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1338
Score = 32.7 bits (73), Expect = 1.0
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Frame = +1
Query: 10 EKNVIHFTEAANSGNILVGHKRVLPKTY*ISYRQNE--AYNENELK*FYTN*TKTGKNAD 183
+KN+IHF N NI+ H ++ Y + N A ++ T+ T KN D
Sbjct: 454 KKNIIHFKTNHNFYNIIKDHICLITDHYFNNKVSNNKIAQADSSFSFLLTDAHDTEKNRD 513
Query: 184 LGSLLHIREQSSHSN*AHLN--NSLT*TSSCNAKHNPVQQNHLPTYP*HFHLKNHKKYLN 357
+ H ++H+N + N N+ ++ + HN NH + H NH + N
Sbjct: 514 QRYINH-NNYNNHNNYNNHNNHNNYNIHNNHSNNHNNHSNNH------NNHSNNHNNHSN 566
Query: 358 SNQNLN 375
++ N N
Sbjct: 567 NHNNHN 572
>pir||T44051 hypothetical protein U95 [imported] - human herpesvirus 6 (strain
HST) gi|4996079|dbj|BAA78312.1| 64% identical to U95
gene of strain U1102 of HHV-6~MCMV IE2 homolog, US22
gene family [Human herpesvirus 6]
Length = 1212
Score = 32.3 bits (72), Expect = 1.3
Identities = 17/52 (32%), Positives = 25/52 (47%), Gaps = 5/52 (9%)
Frame = +2
Query: 140 NSSIQIKPRQAKMQT-----WGAYFI*ENNLLTPTKPTSTILSHEHPVAMRS 280
N+ I ++P Q Q G ++ NN++ P KP S I SH H + S
Sbjct: 93 NNQINVQPTQMTFQPISPPMQGQNYVYSNNMINPIKPRSIIKSHGHSMGEMS 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,055,318
Number of Sequences: 1393205
Number of extensions: 7414981
Number of successful extensions: 15344
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 14898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15316
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
