Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001700A_C02 KMC001700A_c02
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40653.1| OSJNBa0073L04.10 [Oryza sativa (japonica cultiva... 132 3e-30
gb|AAM64611.1| unknown [Arabidopsis thaliana] 132 3e-30
ref|NP_565082.1| expressed protein; protein id: At1g74300.1, sup... 132 3e-30
gb|AAO42863.1| At2g36290 [Arabidopsis thaliana] 132 3e-30
emb|CAD40654.1| OSJNBa0073L04.11 [Oryza sativa (japonica cultiva... 132 4e-30
>emb|CAD40653.1| OSJNBa0073L04.10 [Oryza sativa (japonica cultivar-group)]
Length = 360
Score = 132 bits (333), Expect = 3e-30
Identities = 60/108 (55%), Positives = 79/108 (72%)
Frame = -1
Query: 627 SVLSHQDKLLVSKITKREIYVAYAKQQGEFESLHRDINIGFGSWEYSPLDLENPFPTHEG 448
++ S DKLL+SK R Y+ +QQGE+ LHRD+ +GFG W +SPL+LE+PF EG
Sbjct: 238 ALFSEGDKLLLSKFAFRT-YMPQIRQQGEYGCLHRDMTVGFGKWSWSPLELEDPFAGGEG 296
Query: 447 SVHLWQGDEDLLVPVTLPRHIAQNLPWIQYHELPGSGHMFCLGDGTSD 304
VHLW G EDL+VPV+L R++++ LPW+ YHELP SGHMF L DG +D
Sbjct: 297 KVHLWHGAEDLIVPVSLSRYLSEKLPWVVYHELPKSGHMFPLADGMAD 344
>gb|AAM64611.1| unknown [Arabidopsis thaliana]
Length = 346
Score = 132 bits (333), Expect = 3e-30
Identities = 61/108 (56%), Positives = 80/108 (73%), Gaps = 1/108 (0%)
Frame = -1
Query: 624 VLSHQDKLLVSKI-TKREIYVAYAKQQGEFESLHRDINIGFGSWEYSPLDLENPFPTHEG 448
VLS DK ++ K+ + R+ ++A +QQG ES++RD+ +GFG+WE+ PL+LENPF EG
Sbjct: 230 VLSQPDKDIILKLGSSRKPHLAEVRQQGIHESINRDMIVGFGNWEFDPLELENPFLNREG 289
Query: 447 SVHLWQGDEDLLVPVTLPRHIAQNLPWIQYHELPGSGHMFCLGDGTSD 304
SVHLWQGDED+LVPVTL R+IA LPW+ YHE+ G GH F L G D
Sbjct: 290 SVHLWQGDEDMLVPVTLQRYIADKLPWLHYHEVAGGGHFFPLAKGVVD 337
>ref|NP_565082.1| expressed protein; protein id: At1g74300.1, supported by cDNA:
31039. [Arabidopsis thaliana] gi|25406334|pir||E96771
unknown protein F1O17.3 [imported] - Arabidopsis
thaliana gi|12324909|gb|AAG52411.1|AC020579_13 unknown
protein; 17587-16481 [Arabidopsis thaliana]
Length = 346
Score = 132 bits (333), Expect = 3e-30
Identities = 61/108 (56%), Positives = 80/108 (73%), Gaps = 1/108 (0%)
Frame = -1
Query: 624 VLSHQDKLLVSKI-TKREIYVAYAKQQGEFESLHRDINIGFGSWEYSPLDLENPFPTHEG 448
VLS DK ++ K+ + R+ ++A +QQG ES++RD+ +GFG+WE+ PL+LENPF EG
Sbjct: 230 VLSQPDKDIILKLGSSRKPHLAEVRQQGIHESINRDMIVGFGNWEFDPLELENPFLNREG 289
Query: 447 SVHLWQGDEDLLVPVTLPRHIAQNLPWIQYHELPGSGHMFCLGDGTSD 304
SVHLWQGDED+LVPVTL R+IA LPW+ YHE+ G GH F L G D
Sbjct: 290 SVHLWQGDEDMLVPVTLQRYIADKLPWLHYHEVAGGGHFFPLAKGVVD 337
>gb|AAO42863.1| At2g36290 [Arabidopsis thaliana]
Length = 390
Score = 132 bits (333), Expect = 3e-30
Identities = 59/105 (56%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Frame = -1
Query: 624 VLSHQDKLLVSKI-TKREIYVAYAKQQGEFESLHRDINIGFGSWEYSPLDLENPFPTHEG 448
+LS DK ++ K+ R + A +QQG E+LHRD+ +GFG+WE+ P++LEN FP +EG
Sbjct: 269 MLSRADKEIMFKLGAARSQHEAQIRQQGTHETLHRDMIVGFGTWEFDPMELENLFPNNEG 328
Query: 447 SVHLWQGDEDLLVPVTLPRHIAQNLPWIQYHELPGSGHMFCLGDG 313
SVHLWQGD+D+LVPVTL R+IA+ LPWI YHE+PG+GH+F G
Sbjct: 329 SVHLWQGDDDVLVPVTLQRYIAKKLPWIHYHEIPGAGHLFPFAPG 373
>emb|CAD40654.1| OSJNBa0073L04.11 [Oryza sativa (japonica cultivar-group)]
Length = 344
Score = 132 bits (332), Expect = 4e-30
Identities = 58/108 (53%), Positives = 80/108 (73%)
Frame = -1
Query: 627 SVLSHQDKLLVSKITKREIYVAYAKQQGEFESLHRDINIGFGSWEYSPLDLENPFPTHEG 448
++LS +DKL++ K R Y+ +QQGE+ LHRD+ +GFG W +SPL+LE+PF +G
Sbjct: 223 ALLSEEDKLIMPKFAFRT-YMPQIRQQGEYSCLHRDMTVGFGKWSWSPLELEDPFAGGKG 281
Query: 447 SVHLWQGDEDLLVPVTLPRHIAQNLPWIQYHELPGSGHMFCLGDGTSD 304
VHLW G EDL+VPV+L R++++ LPW+ YHELP SGHMF L DG +D
Sbjct: 282 KVHLWHGAEDLIVPVSLSRYLSEKLPWVVYHELPKSGHMFPLADGMAD 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,736,739
Number of Sequences: 1393205
Number of extensions: 12828043
Number of successful extensions: 32762
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 29887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32622
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
