Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001693A_C01 KMC001693A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565980.1| expressed protein; protein id: At2g42670.1, sup... 122 2e-27
gb|AAM61182.1| unknown [Arabidopsis thaliana] 122 2e-27
pir||G84856 hypothetical protein At2g42670 [imported] - Arabidop... 122 2e-27
ref|NP_191426.1| putative protein; protein id: At3g58670.1, supp... 102 3e-21
gb|AAK96846.1| Unknown protein [Arabidopsis thaliana] gi|1837750... 58 1e-07
>ref|NP_565980.1| expressed protein; protein id: At2g42670.1, supported by cDNA:
113423. [Arabidopsis thaliana]
gi|20197959|gb|AAD21739.2| expressed protein
[Arabidopsis thaliana] gi|20198080|gb|AAM15389.1|
expressed protein [Arabidopsis thaliana]
Length = 241
Score = 122 bits (307), Expect = 2e-27
Identities = 55/74 (74%), Positives = 65/74 (87%)
Frame = -1
Query: 574 AITPCAIFDILSPPYSSEHERHCTYFRRSQKKDLPVNLQLDGVTASEVTWLEEFQPPDDF 395
AIT CAI DIL+PPYSSEH+RHCTYFR+S+++DLP L++DG ++VTWLEEFQPPDDF
Sbjct: 168 AITHCAILDILAPPYSSEHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEEFQPPDDF 227
Query: 394 VIRRGLYRGPVIRT 353
VIRR YRGPVIRT
Sbjct: 228 VIRRIPYRGPVIRT 241
>gb|AAM61182.1| unknown [Arabidopsis thaliana]
Length = 241
Score = 122 bits (307), Expect = 2e-27
Identities = 55/74 (74%), Positives = 65/74 (87%)
Frame = -1
Query: 574 AITPCAIFDILSPPYSSEHERHCTYFRRSQKKDLPVNLQLDGVTASEVTWLEEFQPPDDF 395
AIT CAI DIL+PPYSSEH+RHCTYFR+S+++DLP L++DG ++VTWLEEFQPPDDF
Sbjct: 168 AITHCAILDILAPPYSSEHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEEFQPPDDF 227
Query: 394 VIRRGLYRGPVIRT 353
VIRR YRGPVIRT
Sbjct: 228 VIRRIPYRGPVIRT 241
>pir||G84856 hypothetical protein At2g42670 [imported] - Arabidopsis thaliana
Length = 242
Score = 122 bits (307), Expect = 2e-27
Identities = 55/74 (74%), Positives = 65/74 (87%)
Frame = -1
Query: 574 AITPCAIFDILSPPYSSEHERHCTYFRRSQKKDLPVNLQLDGVTASEVTWLEEFQPPDDF 395
AIT CAI DIL+PPYSSEH+RHCTYFR+S+++DLP L++DG ++VTWLEEFQPPDDF
Sbjct: 169 AITHCAILDILAPPYSSEHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEEFQPPDDF 228
Query: 394 VIRRGLYRGPVIRT 353
VIRR YRGPVIRT
Sbjct: 229 VIRRIPYRGPVIRT 242
>ref|NP_191426.1| putative protein; protein id: At3g58670.1, supported by cDNA:
114412., supported by cDNA: gi_15293012 [Arabidopsis
thaliana] gi|11358151|pir||T49150 hypothetical protein
T20N10.20 - Arabidopsis thaliana
gi|7630062|emb|CAB88284.1| putative protein [Arabidopsis
thaliana] gi|15293013|gb|AAK93617.1| unknown protein
[Arabidopsis thaliana] gi|21536892|gb|AAM61224.1|
unknown [Arabidopsis thaliana]
gi|23296434|gb|AAN13116.1| unknown protein [Arabidopsis
thaliana]
Length = 242
Score = 102 bits (255), Expect = 3e-21
Identities = 50/74 (67%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
Frame = -1
Query: 574 AITPCAIFDILSPPYSSEHERHCTYFRRSQKKDLPVNLQ-LDGVTASEVTWLEEFQPPDD 398
AIT CAIFDILSPPYSS H RHC YFR+S DLP ++ ++G S VTWLEE+QPPD+
Sbjct: 168 AITHCAIFDILSPPYSSTHGRHCNYFRKSPMLDLPGEIEVMNGEVISNVTWLEEYQPPDN 227
Query: 397 FVIRRGLYRGPVIR 356
FVI R YRGPVIR
Sbjct: 228 FVIWRVPYRGPVIR 241
>gb|AAK96846.1| Unknown protein [Arabidopsis thaliana] gi|18377500|gb|AAL66916.1|
unknown protein [Arabidopsis thaliana]
Length = 226
Score = 57.8 bits (138), Expect = 1e-07
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = -1
Query: 574 AITPCAIFDILSPPYSSEHERHCTYFRRSQKKDLPVNL--------QLDGVTASEVTWLE 419
A+TPCA+ DILSPPY R C+Y+ D P + ++D E WL
Sbjct: 150 ALTPCAVLDILSPPYKESVGRSCSYY-----MDYPFSTFALENGMKKVDEGKEDEYAWLV 204
Query: 418 EFQPPDDFVIRRGLYRGPVIR 356
+ PDD +R G Y GP IR
Sbjct: 205 QIDTPDDLHMRPGSYTGPTIR 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,898,639
Number of Sequences: 1393205
Number of extensions: 10210134
Number of successful extensions: 17986
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17977
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
