Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001683A_C01 KMC001683A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567039.1| Expressed protein; protein id: At3g56580.1, sup... 42 0.001
ref|NP_565942.1| expressed protein; protein id: At2g40830.1, sup... 43 0.004
gb|AAM98132.1| putative RING zinc finger protein [Arabidopsis th... 39 0.068
emb|CAD35288.1| metalloprotease, MEP3 [Microsporum canis] 33 2.8
dbj|BAB58973.1| replication protein [Bacillus sp. KSM-KP43] 33 3.7
>ref|NP_567039.1| Expressed protein; protein id: At3g56580.1, supported by cDNA:
gi_15028360 [Arabidopsis thaliana]
gi|15028361|gb|AAK76657.1| unknown protein [Arabidopsis
thaliana] gi|20465561|gb|AAM20263.1| unknown protein
[Arabidopsis thaliana]
Length = 320
Score = 41.6 bits (96), Expect(2) = 0.001
Identities = 24/69 (34%), Positives = 29/69 (41%), Gaps = 16/69 (23%)
Frame = -3
Query: 573 QNPGRRNPLSFLWPFRSSSSSSNHNR----------------YAETRGSSSSNPPDPSNG 442
+N RRN S LWPFRSSSSSS NR + + + +
Sbjct: 251 ENSRRRNIFSNLWPFRSSSSSSTQNRRDTNNTATAEEGHYHHHQQQQQQHQHQHQQQQSH 310
Query: 441 TSYGGWPFD 415
Y GWPFD
Sbjct: 311 MGYSGWPFD 319
Score = 22.3 bits (46), Expect(2) = 0.001
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 664 SRGGRSLGGRNVNSSTDGNDSSRGR 590
SRG S + N ST+G ++SR R
Sbjct: 232 SRGSSSSTQSSQNRSTNGRENSRRR 256
>ref|NP_565942.1| expressed protein; protein id: At2g40830.1, supported by cDNA:
gi_3790582 [Arabidopsis thaliana] gi|7487241|pir||T00747
RING-H2 finger protein RHC1a [imported] - Arabidopsis
thaliana gi|2623297|gb|AAB86443.1| expressed protein
[Arabidopsis thaliana] gi|3790583|gb|AAC69854.1| RING-H2
finger protein RHC1a [Arabidopsis thaliana]
gi|22655078|gb|AAM98130.1| expressed protein
[Arabidopsis thaliana]
Length = 328
Score = 43.1 bits (100), Expect = 0.004
Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Frame = -3
Query: 561 RRNPLSFLWPFRSS--SSSSNHNRYAETRGSSSSN-------PPDPSNGTSYGGWPFD 415
RRNP S WPFRSS SSSS NR TR S +S+ + Y GWPFD
Sbjct: 271 RRNPFSSFWPFRSSGSSSSSTQNR-GGTRNSDTSDENHNYHQQQHQQSYMGYSGWPFD 327
>gb|AAM98132.1| putative RING zinc finger protein [Arabidopsis thaliana]
gi|27311973|gb|AAO00952.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 199
Score = 38.9 bits (89), Expect = 0.068
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = -3
Query: 573 QNPGRRNPLSFLWPFRSSSSSSNHN 499
+N R+NPL LWPFRSS +SNHN
Sbjct: 169 RNNSRKNPLWHLWPFRSSGLASNHN 193
>emb|CAD35288.1| metalloprotease, MEP3 [Microsporum canis]
Length = 633
Score = 33.5 bits (75), Expect = 2.8
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = -3
Query: 576 IQNPGRRNPLSFLWPFRSSSSSSNH----NRYAETRGSSSSNPPDPSNGTSY 433
+ +P NP SF P+ +SS + H N+Y TRG+++ +P+ G++Y
Sbjct: 256 LNDPTEGNPTSFRDPWTASSPFTWHSDGTNKYPTTRGNNAIAQDNPTGGSTY 307
>dbj|BAB58973.1| replication protein [Bacillus sp. KSM-KP43]
Length = 432
Score = 33.1 bits (74), Expect = 3.7
Identities = 16/49 (32%), Positives = 25/49 (50%)
Frame = +3
Query: 399 DGAFSYQKAIHHNWFHYSGQEGWKSCFLGSQHNDYGWKNSKKNGRATKM 545
+ A S QKA +H WF +S +GW + + N + K+ K A K+
Sbjct: 2 ENANSIQKAQYHAWFQHSDADGWITVARKGESNSFIQKHYKPTELADKL 50
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,598,150
Number of Sequences: 1393205
Number of extensions: 12828139
Number of successful extensions: 50252
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 40054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48591
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
