Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001679A_C01 KMC001679A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL16138.1|AF428306_1 At3g30775/MIF6.16 [Arabidopsis thaliana] 92 3e-18
gb|AAL67111.1| At3g30775/MIF6.16 [Arabidopsis thaliana] 92 3e-18
sp|P92983|PROD_ARATH Proline oxidase, mitochondrial precursor (O... 92 3e-18
dbj|BAA11682.1| proline oxidase precursor [Arabidopsis thaliana] 92 3e-18
dbj|BAB10129.1| proline oxidase precursor [Arabidopsis thaliana] 92 5e-18
>gb|AAL16138.1|AF428306_1 At3g30775/MIF6.16 [Arabidopsis thaliana]
Length = 499
Score = 92.4 bits (228), Expect = 3e-18
Identities = 55/138 (39%), Positives = 78/138 (55%), Gaps = 3/138 (2%)
Frame = +3
Query: 147 MATRVIPPRILRNLGYNTATKPLTSPHPSSLSPTLSPPPCLIDAAPKPPSSAATTLLSP- 323
MATR++ +R A P+ P ++ + + AP+PP L P
Sbjct: 1 MATRLLRTNFIRRSYRLPAFSPVGPPTVTASTAVVPEILSFGQQAPEPP------LHHPK 54
Query: 324 PADPAE--LNFNDVQKLFSAVPTSKLLRSTAVLHATAVEPMVDLGTWFMRSKLMQTEGLK 497
P + + L+ +D +LFS++PTS LLRSTAVLHA A+ PMVDLGTW M SKLM +
Sbjct: 55 PTEQSHDGLDLSDQARLFSSIPTSDLLRSTAVLHAAAIGPMVDLGTWVMSSKLMDASVTR 114
Query: 498 EVALAAIRASFYGHFCAG 551
+ L ++++FY HFCAG
Sbjct: 115 GMVLGLVKSTFYDHFCAG 132
>gb|AAL67111.1| At3g30775/MIF6.16 [Arabidopsis thaliana]
Length = 499
Score = 92.4 bits (228), Expect = 3e-18
Identities = 55/138 (39%), Positives = 78/138 (55%), Gaps = 3/138 (2%)
Frame = +3
Query: 147 MATRVIPPRILRNLGYNTATKPLTSPHPSSLSPTLSPPPCLIDAAPKPPSSAATTLLSP- 323
MATR++ +R A P+ P ++ + + AP+PP L P
Sbjct: 1 MATRLLRTNFIRRSYRLPAFSPVGPPTVTASTAVVPEILSFGQQAPEPP------LHHPK 54
Query: 324 PADPAE--LNFNDVQKLFSAVPTSKLLRSTAVLHATAVEPMVDLGTWFMRSKLMQTEGLK 497
P + + L+ +D +LFS++PTS LLRSTAVLHA A+ PMVDLGTW M SKLM +
Sbjct: 55 PTEQSHDGLDLSDQARLFSSIPTSDLLRSTAVLHAAAIGPMVDLGTWVMSSKLMDASVTR 114
Query: 498 EVALAAIRASFYGHFCAG 551
+ L ++++FY HFCAG
Sbjct: 115 GMVLGLVKSTFYDHFCAG 132
>sp|P92983|PROD_ARATH Proline oxidase, mitochondrial precursor (Osmotic stress-induced
proline dehydrogenase)
Length = 499
Score = 92.4 bits (228), Expect = 3e-18
Identities = 55/138 (39%), Positives = 78/138 (55%), Gaps = 3/138 (2%)
Frame = +3
Query: 147 MATRVIPPRILRNLGYNTATKPLTSPHPSSLSPTLSPPPCLIDAAPKPPSSAATTLLSP- 323
MATR++ +R A P+ P ++ + + AP+PP L P
Sbjct: 1 MATRLLRTNFIRRSYRLPAFSPVGPPTVTASTAVVPEILSFGQQAPEPP------LHHPK 54
Query: 324 PADPAE--LNFNDVQKLFSAVPTSKLLRSTAVLHATAVEPMVDLGTWFMRSKLMQTEGLK 497
P + + L+ +D +LFS++PTS LLRSTAVLHA A+ PMVDLGTW M SKLM +
Sbjct: 55 PTEQSHDGLDLSDQARLFSSIPTSDLLRSTAVLHAAAIGPMVDLGTWVMSSKLMDASVTR 114
Query: 498 EVALAAIRASFYGHFCAG 551
+ L ++++FY HFCAG
Sbjct: 115 GMVLGLVKSTFYDHFCAG 132
>dbj|BAA11682.1| proline oxidase precursor [Arabidopsis thaliana]
Length = 499
Score = 92.4 bits (228), Expect = 3e-18
Identities = 55/138 (39%), Positives = 78/138 (55%), Gaps = 3/138 (2%)
Frame = +3
Query: 147 MATRVIPPRILRNLGYNTATKPLTSPHPSSLSPTLSPPPCLIDAAPKPPSSAATTLLSP- 323
MATR++ +R A P+ P ++ + + AP+PP L P
Sbjct: 1 MATRLLRTNFIRRSYRLPAFSPVGPPTVTASTAVVPEILSFGQQAPEPP------LHHPK 54
Query: 324 PADPAE--LNFNDVQKLFSAVPTSKLLRSTAVLHATAVEPMVDLGTWFMRSKLMQTEGLK 497
P + + L+ +D +LFS++PTS LLRSTAVLHA A+ PMVDLGTW M SKLM +
Sbjct: 55 PTEQSHDGLDLSDQARLFSSIPTSDLLRSTAVLHAAAIGPMVDLGTWVMSSKLMDASVTR 114
Query: 498 EVALAAIRASFYGHFCAG 551
+ L ++++FY HFCAG
Sbjct: 115 GMVLGLVKSTFYDHFCAG 132
>dbj|BAB10129.1| proline oxidase precursor [Arabidopsis thaliana]
Length = 493
Score = 91.7 bits (226), Expect = 5e-18
Identities = 43/90 (47%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Frame = +3
Query: 288 PPSSAATTLLS--PPADPAELNFNDVQKLFSAVPTSKLLRSTAVLHATAVEPMVDLGTWF 461
PP++ +LS P +L+ +D +LF++VP S LLRSTA+LHAT++ PMVDLG+W
Sbjct: 22 PPTTIIPEILSFDQPKPEVDLDLSDQARLFASVPISTLLRSTAILHATSIGPMVDLGSWL 81
Query: 462 MRSKLMQTEGLKEVALAAIRASFYGHFCAG 551
M SKLM T +++ L ++ +FY HFCAG
Sbjct: 82 MSSKLMDTTVTRDLVLRIVKGTFYDHFCAG 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,587,785
Number of Sequences: 1393205
Number of extensions: 19073236
Number of successful extensions: 393572
Number of sequences better than 10.0: 7640
Number of HSP's better than 10.0 without gapping: 113830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250713
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
