Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001674A_C01 KMC001674A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC16494.1| contains ESTs D41667(S4320),AU033165(S4320)~muci... 84 1e-15
ref|NP_249984.1| hypothetical protein [Pseudomonas aeruginosa PA... 43 0.002
ref|NP_680189.1| similar to strictosidine synthase-related; prot... 42 0.003
ref|NP_082253.1| RIKEN cDNA 2310001A20 [Mus musculus] gi|2421147... 42 0.003
ref|NP_774509.1| ABC transporter permease protein [Bradyrhizobiu... 42 0.005
>dbj|BAC16494.1| contains ESTs D41667(S4320),AU033165(S4320)~mucin-like protein
[Oryza sativa (japonica cultivar-group)]
Length = 367
Score = 83.6 bits (205), Expect = 1e-15
Identities = 43/90 (47%), Positives = 58/90 (63%)
Frame = -2
Query: 491 LLQITSEGLGFVHTSKVSKHVVASFPWLFNLVNGARKSAMVANVATDGKILRTFDDSEGK 312
LLQ+ S L + +++ V+ASFP L K A+VA V+ +G+I+R DSEG
Sbjct: 265 LLQVRSPWLDLISRWSLTRRVIASFPALVERTKATLKGAVVAQVSLNGEIVRVLGDSEGN 324
Query: 311 VLSMVTSAVEFEDHLYLGSLNTNFVGKLSL 222
V++MVTS EF L+LGSL TNF+GKLSL
Sbjct: 325 VINMVTSVTEFNGDLFLGSLATNFIGKLSL 354
>ref|NP_249984.1| hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11349157|pir||H83482 hypothetical protein PA1293
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9947229|gb|AAG04682.1|AE004559_1 hypothetical protein
[Pseudomonas aeruginosa PAO1]
Length = 353
Score = 42.7 bits (99), Expect = 0.002
Identities = 25/80 (31%), Positives = 41/80 (51%)
Frame = -2
Query: 461 FVHTSKVSKHVVASFPWLFNLVNGARKSAMVANVATDGKILRTFDDSEGKVLSMVTSAVE 282
F+H K +A P +F + +V + G+I+R+ D+ G L M+TSA
Sbjct: 275 FLHRHPWLKAQLAKLPRMF--LPKPTAYGLVIAIDEQGRIVRSLHDTSGHHLRMITSAKP 332
Query: 281 FEDHLYLGSLNTNFVGKLSL 222
D LY GSL + +G+L++
Sbjct: 333 VGDQLYFGSLENDRIGRLAI 352
>ref|NP_680189.1| similar to strictosidine synthase-related; protein id: At5g22020.1
[Arabidopsis thaliana] gi|13374861|emb|CAC34495.1|
putative strictosidine synthase-like [Arabidopsis
thaliana]
Length = 395
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -2
Query: 392 GARKSAMVANVATDGKILRTFDDSEGKVLSMVTSAVEFEDHLYLGSLNTNFVGKLSL 222
G R +V + +GK++ +DSEGKV+ V+ E + L++GS+ NFV L
Sbjct: 339 GLRPHGLVVKYSPEGKLMHVLEDSEGKVVRSVSEVEEKDGKLWMGSVLMNFVAVYDL 395
>ref|NP_082253.1| RIKEN cDNA 2310001A20 [Mus musculus]
gi|24211473|sp|Q9D7N9|APMA_MOUSE Adipocyte plasma
membrane-associated protein (Protein DD16)
gi|12843618|dbj|BAB26050.1| unnamed protein product [Mus
musculus] gi|18073663|emb|CAC83967.1| integral plasma
membrane protein [Mus musculus]
Length = 415
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = -2
Query: 377 AMVANVATDGKILRTFDDSEGKVLSMVTSAVEFEDHLYLGSLNTNFVGKLSLHS 216
++V V+ G R+ D +G+V++ V+ A E + +LYLGS + F+ +LSL S
Sbjct: 361 SLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQS 414
>ref|NP_774509.1| ABC transporter permease protein [Bradyrhizobium japonicum]
gi|27356153|dbj|BAC53134.1| ABC transporter permease
protein [Bradyrhizobium japonicum USDA 110]
Length = 707
Score = 41.6 bits (96), Expect = 0.005
Identities = 24/67 (35%), Positives = 34/67 (49%)
Frame = -2
Query: 413 WLFNLVNGARKSAMVANVATDGKILRTFDDSEGKVLSMVTSAVEFEDHLYLGSLNTNFVG 234
WLF +N + V GKIL +F D G+ M+TS E +LYLG + N +G
Sbjct: 630 WLFPNIN----TGCVVKFNEQGKILESFWDLRGENHPMITSMREHRGYLYLGGIANNRIG 685
Query: 233 KLSLHSA 213
+ L +A
Sbjct: 686 RYKLDNA 692
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,102,121
Number of Sequences: 1393205
Number of extensions: 8933080
Number of successful extensions: 36793
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 36186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36786
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
