Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001671A_C01 KMC001671A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192819.1| putative protein; protein id: At4g10810.1, supp... 57 2e-07
gb|AAG46067.1|AC079830_7 hypothetical protein [Oryza sativa] 56 3e-07
gb|AAM93696.1| unknown protein [Oryza sativa (japonica cultivar-... 51 1e-05
pir||T51023 hypothetical protein B7F21.40 [imported] - Neurospor... 50 3e-05
emb|CAB97476.2| conserved hypothetical protein [Neurospora crassa] 50 3e-05
>ref|NP_192819.1| putative protein; protein id: At4g10810.1, supported by cDNA:
7769., supported by cDNA: gi_17380755 [Arabidopsis
thaliana] gi|7486141|pir||T04276 hypothetical protein
F25I24.20 - Arabidopsis thaliana
gi|4539355|emb|CAB40049.1| putative protein [Arabidopsis
thaliana] gi|7267779|emb|CAB81182.1| putative protein
[Arabidopsis thaliana] gi|17380756|gb|AAL36208.1|
unknown protein [Arabidopsis thaliana]
gi|21595220|gb|AAM66082.1| unknown [Arabidopsis
thaliana] gi|21689817|gb|AAM67552.1| unknown protein
[Arabidopsis thaliana]
Length = 81
Score = 57.0 bits (136), Expect = 2e-07
Identities = 29/61 (47%), Positives = 38/61 (61%)
Frame = -2
Query: 622 LDRMANWVGANMASAFFASLERCSCINLSTTDHEDDNHNTTHT**SCSHAHQPCFLLCCP 443
LD+ A+WV + SAFFASLERCSC+NLST+D +D+ SH ++P L P
Sbjct: 25 LDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEE--------SH-NRPLALSAAP 75
Query: 442 H 440
H
Sbjct: 76 H 76
>gb|AAG46067.1|AC079830_7 hypothetical protein [Oryza sativa]
Length = 124
Score = 56.2 bits (134), Expect = 3e-07
Identities = 24/36 (66%), Positives = 29/36 (79%)
Frame = -2
Query: 622 LDRMANWVGANMASAFFASLERCSCINLSTTDHEDD 515
LDR+A WVG +A+AFFASLERCSC+N+ T D DD
Sbjct: 38 LDRVAGWVGGGIAAAFFASLERCSCVNVRTHDELDD 73
>gb|AAM93696.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 89
Score = 50.8 bits (120), Expect = 1e-05
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = -2
Query: 622 LDRMANWVGANMASAFFASLERCSCINLSTTDHEDDNHN 506
L+ A WVGA++ASAFFAS+E CSCI++ T D E D+++
Sbjct: 17 LEGYAIWVGASVASAFFASMESCSCIHVHTADDEGDDYD 55
>pir||T51023 hypothetical protein B7F21.40 [imported] - Neurospora crassa
Length = 2649
Score = 49.7 bits (117), Expect = 3e-05
Identities = 20/43 (46%), Positives = 26/43 (59%)
Frame = -1
Query: 548 HQSQHHRPRRRQPQHHPHVMIVLSCSPTLFPPLLPPPPPPPPP 420
H HH+ + H PH + + SP+ +PPL PPPPPPPPP
Sbjct: 9 HHHHHHQDNHHRHDHVPHPRHLATTSPS-YPPLPPPPPPPPPP 50
>emb|CAB97476.2| conserved hypothetical protein [Neurospora crassa]
Length = 2592
Score = 49.7 bits (117), Expect = 3e-05
Identities = 20/43 (46%), Positives = 26/43 (59%)
Frame = -1
Query: 548 HQSQHHRPRRRQPQHHPHVMIVLSCSPTLFPPLLPPPPPPPPP 420
H HH+ + H PH + + SP+ +PPL PPPPPPPPP
Sbjct: 9 HHHHHHQDNHHRHDHVPHPRHLATTSPS-YPPLPPPPPPPPPP 50
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,486,417
Number of Sequences: 1393205
Number of extensions: 13606478
Number of successful extensions: 280437
Number of sequences better than 10.0: 1712
Number of HSP's better than 10.0 without gapping: 76487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190641
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
