Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001666A_C04 KMC001666A_c04
(690 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB28813.2| cytochrome c1 precursor [Solanum tuberosum] 237 1e-61
pir||S20014 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) cytoc... 237 1e-61
pir||S20015 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) cytoc... 236 2e-61
sp|P25076|CY11_SOLTU Cytochrome c1, heme protein, mitochondrial ... 235 5e-61
sp|P29610|CY12_SOLTU Cytochrome c1, heme protein, mitochondrial ... 234 8e-61
>gb|AAB28813.2| cytochrome c1 precursor [Solanum tuberosum]
Length = 320
Score = 237 bits (605), Expect = 1e-61
Identities = 115/118 (97%), Positives = 117/118 (98%)
Frame = -1
Query: 690 QNYVFALLTGYRDPPSGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMG 511
QNYVFALLTGYRDPP+GVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDG PATE+QMG
Sbjct: 203 QNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMG 262
Query: 510 KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 337
KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN
Sbjct: 263 KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320
>pir||S20014 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) cytochrome c1
precursor (clone pC(1)3II) - potato
Length = 320
Score = 237 bits (605), Expect = 1e-61
Identities = 115/118 (97%), Positives = 117/118 (98%)
Frame = -1
Query: 690 QNYVFALLTGYRDPPSGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMG 511
QNYVFALLTGYRDPP+GVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDG PATE+QMG
Sbjct: 203 QNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMG 262
Query: 510 KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 337
KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN
Sbjct: 263 KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320
>pir||S20015 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) cytochrome c1
precursor (clone pC(1)8I) - potato (fragment)
gi|498789|emb|CAA56109.1| cytochrome c1 [Solanum
tuberosum]
Length = 260
Score = 236 bits (603), Expect = 2e-61
Identities = 114/118 (96%), Positives = 117/118 (98%)
Frame = -1
Query: 690 QNYVFALLTGYRDPPSGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMG 511
QNYVFALLTGYRDPP+GVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDG PATE+QMG
Sbjct: 143 QNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMG 202
Query: 510 KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 337
KDVVSFL+WAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN
Sbjct: 203 KDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 260
>sp|P25076|CY11_SOLTU Cytochrome c1, heme protein, mitochondrial precursor (Clone
PC13III) gi|21439|emb|CAA44055.1| cytochrome c1 [Solanum
tuberosum]
Length = 320
Score = 235 bits (599), Expect = 5e-61
Identities = 114/118 (96%), Positives = 116/118 (97%)
Frame = -1
Query: 690 QNYVFALLTGYRDPPSGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMG 511
QNYVFALLT YRDPP+GVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDG PATE+QMG
Sbjct: 203 QNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMG 262
Query: 510 KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 337
KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN
Sbjct: 263 KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320
>sp|P29610|CY12_SOLTU Cytochrome c1, heme protein, mitochondrial precursor (Clone PC18I)
Length = 260
Score = 234 bits (597), Expect = 8e-61
Identities = 113/118 (95%), Positives = 116/118 (97%)
Frame = -1
Query: 690 QNYVFALLTGYRDPPSGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMG 511
QNYVFALLT YRDPP+GVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDG PATE+QMG
Sbjct: 143 QNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMG 202
Query: 510 KDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 337
KDVVSFL+WAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN
Sbjct: 203 KDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 260
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,122,804
Number of Sequences: 1393205
Number of extensions: 12972581
Number of successful extensions: 27074
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 26159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27036
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
