Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001662A_C01 KMC001662A_c01
(723 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_445284.1| hypothetical protein [Chlamydophila pneumoniae ... 37 0.37
ref|NP_224242.1| hypothetical protein [Chlamydophila pneumoniae ... 36 0.48
gb|AAH01238.1|AAH01238 DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 35 0.81
sp|Q9NVP1|DD18_HUMAN ATP-dependent RNA helicase DDX18 (DEAD-box ... 35 0.81
ref|NP_006764.2| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18... 35 0.81
>ref|NP_445284.1| hypothetical protein [Chlamydophila pneumoniae AR39]
gi|11282986|pir||D81542 hypothetical protein CP0742
[imported] - Chlamydophila pneumoniae (strain AR39)
gi|7189658|gb|AAF38547.1| hypothetical protein
[Chlamydophila pneumoniae AR39]
Length = 425
Score = 36.6 bits (83), Expect = 0.37
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = -3
Query: 706 SPKEESSQVVAFSFAGLDLGHDSENAFPAVPMPNPPEPATSKENPVSVHDTVTGYLFRMT 527
+P S +V+ + S + P +P P +P KE P S+ + + +
Sbjct: 15 TPSLPDSSIVSQKTPPVPDPDSSPDHIPTIPTQAPFKPQRKKETPSSIVNAIA-FAILAF 73
Query: 526 MICLEGVQSMMQVAFITRTS-FHPLRSEIYCFILLWD*GYILHYFSRVPFCSPTPTPP 356
+ CL GV ++ + T L + F LL Y +HY + P PTPP
Sbjct: 74 LSCLGGVFAICLGCSLEITXPLFILTAVFIAFTLL----YFIHYLEKPKIPEPLPTPP 127
>ref|NP_224242.1| hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|15835571|ref|NP_300095.1| hypothetical protein
[Chlamydophila pneumoniae J138] gi|7468276|pir||A72129
hypothetical protein - Chlamydophila pneumoniae (strain
CWL029) gi|25357194|pir||D86495 hypothetical protein
CPj0034 [imported] - Chlamydophila pneumoniae (strain
J138) gi|4376287|gb|AAD18187.1| hypothetical protein
[Chlamydophila pneumoniae CWL029]
gi|8978409|dbj|BAA98246.1| hypothetical protein
[Chlamydophila pneumoniae J138]
Length = 416
Score = 36.2 bits (82), Expect = 0.48
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = -3
Query: 706 SPKEESSQVVAFSFAGLDLGHDSENAFPAVPMPNPPEPATSKENPVSVHDTVTGYLFRMT 527
+P S +V+ + S + P +P P +P KE P S+ + + +
Sbjct: 6 TPSLPDSSIVSQKTPPVPDPDSSPDHIPTIPTQAPFKPQRKKETPSSIVNAIA-FAILAF 64
Query: 526 MICLEGVQSMMQVAFITRTS-FHPLRSEIYCFILLWD*GYILHYFSRVPFCSPTPTPP 356
+ CL GV ++ + T L + F LL Y +HY + P PTPP
Sbjct: 65 LSCLGGVFAICLGCSLEITMPLFILTAVFIAFTLL----YFIHYLEKPKIPEPLPTPP 118
>gb|AAH01238.1|AAH01238 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated)
[Homo sapiens] gi|13097183|gb|AAH03360.1|AAH03360 DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated)
[Homo sapiens] gi|19353239|gb|AAH24739.1| DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated)
[Homo sapiens]
Length = 670
Score = 35.4 bits (80), Expect = 0.81
Identities = 19/53 (35%), Positives = 33/53 (61%)
Frame = +1
Query: 262 QMTISFGIKISKWQNCLSVNLVLKSKKKRRRGGGWG*ESKKELEKNNVVYSLS 420
Q+ +SFG K+ + + L+VN +KKR GGG+G + K++EK+ + +S
Sbjct: 608 QVALSFGFKVPPFVD-LNVNSNEGKQKKRGGGGGFGYQKTKKVEKSKIFKHIS 659
>sp|Q9NVP1|DD18_HUMAN ATP-dependent RNA helicase DDX18 (DEAD-box protein 18)
(Myc-regulated DEAD-box protein) (MrDb)
Length = 670
Score = 35.4 bits (80), Expect = 0.81
Identities = 19/53 (35%), Positives = 33/53 (61%)
Frame = +1
Query: 262 QMTISFGIKISKWQNCLSVNLVLKSKKKRRRGGGWG*ESKKELEKNNVVYSLS 420
Q+ +SFG K+ + + L+VN +KKR GGG+G + K++EK+ + +S
Sbjct: 608 QVALSFGFKVPPFVD-LNVNSNEGKQKKRGGGGGFGYQKTKKVEKSKIFKHIS 659
>ref|NP_006764.2| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18; RNA helicase
(putative), (Myc-regulated DEAD box protein);
ATP-dependent RNA helicase DDX18 [Homo sapiens]
gi|7022744|dbj|BAA91709.1| unnamed protein product [Homo
sapiens]
Length = 670
Score = 35.4 bits (80), Expect = 0.81
Identities = 19/53 (35%), Positives = 33/53 (61%)
Frame = +1
Query: 262 QMTISFGIKISKWQNCLSVNLVLKSKKKRRRGGGWG*ESKKELEKNNVVYSLS 420
Q+ +SFG K+ + + L+VN +KKR GGG+G + K++EK+ + +S
Sbjct: 608 QVALSFGFKVPPFVD-LNVNSNEGKQKKRGGGGGFGYQKTKKVEKSKIFKHIS 659
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,191,169
Number of Sequences: 1393205
Number of extensions: 15470301
Number of successful extensions: 55780
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 44443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55340
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
