Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001635A_C01 KMC001635A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566171.1| expressed protein; protein id: At3g02420.1, sup... 154 8e-37
gb|AAD32568.1| NT6 [Nicotiana tabacum] 42 0.010
ref|XP_138755.1| similar to very large G protein-coupled recepto... 35 1.2
gb|AAL30812.1|AF435926_1 very large G protein-coupled receptor 1... 32 9.8
ref|ZP_00030704.1| hypothetical protein [Burkholderia fungorum] 32 9.8
>ref|NP_566171.1| expressed protein; protein id: At3g02420.1, supported by cDNA:
160403., supported by cDNA: gi_14190450, supported by
cDNA: gi_15810092 [Arabidopsis thaliana]
gi|6957705|gb|AAF32449.1| unknown protein [Arabidopsis
thaliana] gi|14190451|gb|AAK55706.1|AF380625_1
AT3g02420/F16B3_5 [Arabidopsis thaliana]
gi|15810093|gb|AAL06972.1| AT3g02420/F16B3_5
[Arabidopsis thaliana] gi|21553733|gb|AAM62826.1|
unknown [Arabidopsis thaliana]
Length = 348
Score = 154 bits (390), Expect = 8e-37
Identities = 81/127 (63%), Positives = 90/127 (70%), Gaps = 3/127 (2%)
Frame = -2
Query: 659 CWAFENVAKFLRRNFSRSTLYRKYLEEPSLWVESNHMTLHILTSHAEIGLGFLLVISLFS 480
C A E VAKFLRRNF RST+YRKYLE+P +WVESN TL+IL+S AEI +GFLL+ISL S
Sbjct: 226 CRALEQVAKFLRRNFGRSTIYRKYLEDPCVWVESNTTTLNILSSQAEIAIGFLLIISLLS 285
Query: 479 WQRNIIQTFMYWQLLKLMYNVPVTCCLPSECLG*NWED-G*STHP--QPLHPFLKTPLSA 309
WQRNIIQTFMYWQLLKLMY PVT W G + P Q PFL TP+SA
Sbjct: 286 WQRNIIQTFMYWQLLKLMYQAPVTAGYHQS----TWSRIGRTVTPIIQRYAPFLNTPVSA 341
Query: 308 VPRWWLR 288
V RWW R
Sbjct: 342 VQRWWFR 348
>gb|AAD32568.1| NT6 [Nicotiana tabacum]
Length = 380
Score = 41.6 bits (96), Expect = 0.010
Identities = 20/30 (66%), Positives = 24/30 (79%), Gaps = 1/30 (3%)
Frame = -2
Query: 626 RRNFSRSTLYRKYLEEPSLWVES-NHMTLH 540
RRNFS S+LYRKYLEE +WVES + +LH
Sbjct: 205 RRNFSTSSLYRKYLEEACVWVESERNYSLH 234
>ref|XP_138755.1| similar to very large G protein-coupled receptor 1 [Mus musculus]
Length = 3044
Score = 34.7 bits (78), Expect = 1.2
Identities = 25/91 (27%), Positives = 43/91 (46%)
Frame = -1
Query: 612 SLYLVQEVLGRAFSLGGVKPYDPPYTDITCRDWTWISAGHLTVLVAAQHNTDIHVLAAFE 433
++ +V+ ++ + + G+ +DP YTDI+ + AG +T+ V H T HV A F
Sbjct: 1299 NISIVRIIIMKNDNAEGIIEFDPKYTDISVEE----DAGVITLPVLRLHGTYGHVSADFS 1354
Query: 432 AHV*RSSYLLLTIRVFGLKLGGRLIHSSTAT 340
+ R F GG ++H S+ T
Sbjct: 1355 S------------RGFSAVPGGYVLHGSSVT 1373
>gb|AAL30812.1|AF435926_1 very large G protein-coupled receptor 1 [Mus musculus]
Length = 6298
Score = 31.6 bits (70), Expect = 9.8
Identities = 24/91 (26%), Positives = 42/91 (45%)
Frame = -1
Query: 612 SLYLVQEVLGRAFSLGGVKPYDPPYTDITCRDWTWISAGHLTVLVAAQHNTDIHVLAAFE 433
++ +V+ ++ + + G+ +DP YTDI+ + AG +T+ V H T HV A F
Sbjct: 4379 NISIVRIIIMKNDNAEGIIEFDPKYTDISVEE----DAGVITLPVLRLHGTYGHVSADFS 4434
Query: 432 AHV*RSSYLLLTIRVFGLKLGGRLIHSSTAT 340
+ R F GG ++ S+ T
Sbjct: 4435 S------------RGFSAVPGGYVLRGSSVT 4453
>ref|ZP_00030704.1| hypothetical protein [Burkholderia fungorum]
Length = 1823
Score = 31.6 bits (70), Expect = 9.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 472 RCHENSEMTSRNPSPISACDVSIWRVIWFDSTQRE 576
R + SE S P PI D ++W+ W D+ +RE
Sbjct: 353 RAYAKSEAVSLAPLPIQYADFALWQRRWLDAGERE 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,284,313
Number of Sequences: 1393205
Number of extensions: 11970303
Number of successful extensions: 29953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29941
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
