Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001629A_C01 KMC001629A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198035.1| threonyl-tRNA synthetase; protein id: At5g26830... 145 4e-34
gb|AAK82468.1| AT5g26830/F2P16_90 [Arabidopsis thaliana] gi|2902... 145 4e-34
sp|O04630|SYT_ARATH Threonyl-tRNA synthetase, mitochondrial prec... 145 4e-34
pir||T51624 threonine-tRNA ligase (EC 6.1.1.3) [imported] - Arab... 145 4e-34
pir||T01763 threonine-tRNA ligase (EC 6.1.1.3) - Arabidopsis tha... 135 2e-31
>ref|NP_198035.1| threonyl-tRNA synthetase; protein id: At5g26830.1, supported by
cDNA: gi_15081625 [Arabidopsis thaliana]
Length = 676
Score = 145 bits (365), Expect = 4e-34
Identities = 71/105 (67%), Positives = 82/105 (77%)
Frame = -2
Query: 549 GKWPFWLSPRQAIVCPASEKSHAYALQVRDQIHQAGYHVDADTTDRKIQEKVQEGQLAEY 370
GKWPFW+SPRQAIVCP SEKS YA +V+ QI AG++VDAD TDRKI +KV+E QLA+Y
Sbjct: 571 GKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQY 630
Query: 369 NYILVVGEEEANAGQVSVHVRDKAEHRVMSIENLLKHFSEEIAAF 235
NYILVVGE EA GQVSV VRD A H V SIE+LL+ F + A F
Sbjct: 631 NYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLLEEFKAKTAEF 675
>gb|AAK82468.1| AT5g26830/F2P16_90 [Arabidopsis thaliana]
gi|29028762|gb|AAO64760.1| At5g26830/F2P16_90
[Arabidopsis thaliana]
Length = 676
Score = 145 bits (365), Expect = 4e-34
Identities = 71/105 (67%), Positives = 82/105 (77%)
Frame = -2
Query: 549 GKWPFWLSPRQAIVCPASEKSHAYALQVRDQIHQAGYHVDADTTDRKIQEKVQEGQLAEY 370
GKWPFW+SPRQAIVCP SEKS YA +V+ QI AG++VDAD TDRKI +KV+E QLA+Y
Sbjct: 571 GKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQY 630
Query: 369 NYILVVGEEEANAGQVSVHVRDKAEHRVMSIENLLKHFSEEIAAF 235
NYILVVGE EA GQVSV VRD A H V SIE+LL+ F + A F
Sbjct: 631 NYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLLEEFKAKTAEF 675
>sp|O04630|SYT_ARATH Threonyl-tRNA synthetase, mitochondrial precursor (Threonine--tRNA
ligase) (ThrRS)
Length = 709
Score = 145 bits (365), Expect = 4e-34
Identities = 71/105 (67%), Positives = 82/105 (77%)
Frame = -2
Query: 549 GKWPFWLSPRQAIVCPASEKSHAYALQVRDQIHQAGYHVDADTTDRKIQEKVQEGQLAEY 370
GKWPFW+SPRQAIVCP SEKS YA +V+ QI AG++VDAD TDRKI +KV+E QLA+Y
Sbjct: 604 GKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQY 663
Query: 369 NYILVVGEEEANAGQVSVHVRDKAEHRVMSIENLLKHFSEEIAAF 235
NYILVVGE EA GQVSV VRD A H V SIE+LL+ F + A F
Sbjct: 664 NYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLLEEFKAKTAEF 708
>pir||T51624 threonine-tRNA ligase (EC 6.1.1.3) [imported] - Arabidopsis
thaliana gi|3617770|emb|CAA74705.1| threonyl-tRNA
synthetase [Arabidopsis thaliana]
Length = 709
Score = 145 bits (365), Expect = 4e-34
Identities = 71/105 (67%), Positives = 82/105 (77%)
Frame = -2
Query: 549 GKWPFWLSPRQAIVCPASEKSHAYALQVRDQIHQAGYHVDADTTDRKIQEKVQEGQLAEY 370
GKWPFW+SPRQAIVCP SEKS YA +V+ QI AG++VDAD TDRKI +KV+E QLA+Y
Sbjct: 604 GKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQY 663
Query: 369 NYILVVGEEEANAGQVSVHVRDKAEHRVMSIENLLKHFSEEIAAF 235
NYILVVGE EA GQVSV VRD A H V SIE+LL+ F + A F
Sbjct: 664 NYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLLEEFKAKTAEF 708
>pir||T01763 threonine-tRNA ligase (EC 6.1.1.3) - Arabidopsis thaliana
gi|2191162|gb|AAB61048.1| Similar to threonyl-tRNA
synthetase; coded for by A. thaliana cDNA R65376
[Arabidopsis thaliana]
Length = 702
Score = 135 bits (341), Expect = 2e-31
Identities = 71/118 (60%), Positives = 82/118 (69%), Gaps = 13/118 (11%)
Frame = -2
Query: 549 GKWPFWLSPRQAIVCPASEKSHAYALQVRDQIHQAGYHVDADTTDRKIQEK--------- 397
GKWPFW+SPRQAIVCP SEKS YA +V+ QI AG++VDAD TDRKI +K
Sbjct: 584 GKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKKVNDFGSCSK 643
Query: 396 ----VQEGQLAEYNYILVVGEEEANAGQVSVHVRDKAEHRVMSIENLLKHFSEEIAAF 235
V+E QLA+YNYILVVGE EA GQVSV VRD A H V SIE+LL+ F + A F
Sbjct: 644 FCSVVREAQLAQYNYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLLEEFKAKTAEF 701
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,870,901
Number of Sequences: 1393205
Number of extensions: 8462695
Number of successful extensions: 26075
Number of sequences better than 10.0: 255
Number of HSP's better than 10.0 without gapping: 22022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25337
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
