Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001621A_C01 KMC001621A_c01
(676 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_782766.1| hypothetical protein [Clostridium tetani E88] g... 37 0.19
ref|NP_008371.1|ND6_13186 NADH dehydrogenase subunit 6 [Onchocer... 36 0.55
gb|AAA62274.1| ORF1 35 0.93
gb|EAA16304.1| hypothetical protein [Plasmodium yoelii yoelii] 35 1.2
ref|NP_229801.1| hypothetical protein [Vibrio cholerae] gi|11355... 34 1.6
>ref|NP_782766.1| hypothetical protein [Clostridium tetani E88]
gi|28204264|gb|AAO36703.1| hypothetical protein
[Clostridium tetani E88]
Length = 151
Score = 37.4 bits (85), Expect = 0.19
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Frame = -1
Query: 331 YKHNTLL*ASHREVHG*EYILYRFIISMTFWC*L---FFIHRLYRRGGLDESYV----HL 173
Y+HN L H ++ Y L R +I++ + L +F+ L+ G L +SY+ L
Sbjct: 4 YQHNYFL---HNLINFSLYPLLRIVINLIYLISLLYLYFLAILFHLGFLQKSYILFFHEL 60
Query: 172 YSFVILVGLFFIWDFLVPLFYVELVTS--VCKSKFSLYYQSVLIIHL 38
Y F +L+ L+F++ FY+ + + LYY + L+I+L
Sbjct: 61 YDFALLLYLYFLFYITYLYFYLLEIKNKLFLHQNTFLYYSNPLLINL 107
>ref|NP_008371.1|ND6_13186 NADH dehydrogenase subunit 6 [Onchocerca volvulus]
gi|7432611|pir||T11066 NADH2 dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 6 - nematode (Onchocerca volvulus)
mitochondrion gi|2735938|gb|AAC61613.1| NADH
dehydrogenase subunit 6 [Onchocerca volvulus]
Length = 149
Score = 35.8 bits (81), Expect = 0.55
Identities = 24/90 (26%), Positives = 41/90 (44%), Gaps = 9/90 (10%)
Frame = -3
Query: 251 HDFLVLVIFYS*VISKRRT**IICTSIFFCYISGFVFYLGFFSSFVLC*TRHFCV----- 87
+ + V++IF+S + S +FC +S F+FY +F F L F V
Sbjct: 49 YSYFVVLIFFSGIFS---------LLTYFCSMSNFIFYYNYFFFFSLFLVSFFFVFVVDF 99
Query: 86 QIKIFF----VLSICTYYSFVLVILIIFLL 9
+FF L +C +S+ V ++F+L
Sbjct: 100 DFSLFFSDFNFLYVCYDFSYYYVFWVVFIL 129
>gb|AAA62274.1| ORF1
Length = 146
Score = 35.0 bits (79), Expect = 0.93
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 18/73 (24%)
Frame = -3
Query: 173 IFFCYISGFVFYL--------GFFSSFVLC*TRHFCVQIKIFFVLS----------ICTY 48
++F ++ FVF++ GFF F+LC F + +FFVL +C +
Sbjct: 60 VYFFFLFCFVFFVLLFLFGLFGFFLYFLLCFVLFFDLFFMLFFVLGGFFVFVFFFCLCLF 119
Query: 47 YSFVLVILIIFLL 9
V+VIL+++LL
Sbjct: 120 LFVVVVILLVWLL 132
>gb|EAA16304.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 536
Score = 34.7 bits (78), Expect = 1.2
Identities = 22/75 (29%), Positives = 39/75 (51%)
Frame = -2
Query: 396 FVFNFLLVLFKLNSLLYILIYIINIIHYYRHHTGKFMDKNIYCIDL*YP*LSGVSYFLFI 217
F++N + FK N I+ YI N I YY ++ + + KN Y + Y + +Y+++
Sbjct: 414 FIYNSISKNFKCNYNNIIIKYIDNYIKYYNYNILQLLIKNSYNKWIIY---NLYTYYIYF 470
Query: 216 GYIEEEDLMNHMYIY 172
YI+ ++ N IY
Sbjct: 471 NYIKLYNINNKGIIY 485
>ref|NP_229801.1| hypothetical protein [Vibrio cholerae] gi|11355036|pir||F82359
hypothetical protein VC0143 [imported] - Vibrio cholerae
(strain N16961 serogroup O1) gi|9654544|gb|AAF93320.1|
hypothetical protein [Vibrio cholerae]
Length = 85
Score = 34.3 bits (77), Expect = 1.6
Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 2/48 (4%)
Frame = -1
Query: 172 YSFVILVGLFFIWDFLVPLF--YVELVTSVCKSKFSLYYQSVLIIHLF 35
+SF+ LVG F +DF V +F ++ L S FS +Y +++ HLF
Sbjct: 17 FSFICLVGCFQFFDFFVVVFIGFLFLFCSFGLVDFSFFYFVLIVFHLF 64
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,083,726
Number of Sequences: 1393205
Number of extensions: 11010279
Number of successful extensions: 28918
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 27013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28892
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
