Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001620A_C01 KMC001620A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191205.1| quinone reductase-like protein; protein id: At3... 79 4e-14
gb|ZP_00013551.1| hypothetical protein [Rhodospirillum rubrum] 43 0.002
gb|ZP_00109484.1| hypothetical protein [Nostoc punctiforme] 42 0.007
gb|ZP_00021838.1| hypothetical protein [Ralstonia metallidurans] 40 0.027
pir||T11672 quinone oxidoreductase homolog - cowpea gi|1617036|e... 39 0.046
>ref|NP_191205.1| quinone reductase-like protein; protein id: At3g56460.1, supported
by cDNA: gi_20259376 [Arabidopsis thaliana]
gi|11358743|pir||T49047 quinone reductase-like protein -
Arabidopsis thaliana gi|7594524|emb|CAB88049.1| quinone
reductase-like protein [Arabidopsis thaliana]
gi|24030344|gb|AAN41337.1| putative quinone reductase
[Arabidopsis thaliana]
Length = 348
Score = 79.0 bits (193), Expect = 4e-14
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = -2
Query: 573 KELLSWLARGMISVHISHSYPLSEANLAFGAIKDRKVIGKVMIVFDEKSTRS 418
KELLSWL+RG+I++HISH+Y LS+ANLAFG +KDRK IGKVMI D K+ S
Sbjct: 294 KELLSWLSRGLITIHISHTYSLSQANLAFGDLKDRKAIGKVMIALDHKTALS 345
>gb|ZP_00013551.1| hypothetical protein [Rhodospirillum rubrum]
Length = 325
Score = 43.1 bits (100), Expect = 0.002
Identities = 16/46 (34%), Positives = 33/46 (70%)
Frame = -2
Query: 573 KELLSWLARGMISVHISHSYPLSEANLAFGAIKDRKVIGKVMIVFD 436
++++SW RG+++ H+ + LS+A A A+++RK+IGK +++ D
Sbjct: 280 EDVVSWWDRGLVTPHVGARFALSQAAEALAALRERKIIGKAVLIPD 325
>gb|ZP_00109484.1| hypothetical protein [Nostoc punctiforme]
Length = 335
Score = 41.6 bits (96), Expect = 0.007
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = -2
Query: 573 KELLSWLARGMISVHISHSYPLSEANLAFGAIKDRKVIGKVMIVFDEK 430
++ +W+ G + +H+SH +PL EA A I+ V GK++++ +K
Sbjct: 288 EQCATWIDEGKLKIHVSHEFPLKEAAKAHQLIESGSVTGKIVLLISDK 335
>gb|ZP_00021838.1| hypothetical protein [Ralstonia metallidurans]
Length = 384
Score = 39.7 bits (91), Expect = 0.027
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -2
Query: 570 ELLSWLARGMISVHISHSYPLSEANLAFGAIKDRKVIGKVMI 445
++L W+ G I HIS YPL +A A ++ RKV GK++I
Sbjct: 341 QMLGWMKEGKIRPHISARYPLEQAPQALKDMEARKVTGKIVI 382
>pir||T11672 quinone oxidoreductase homolog - cowpea gi|1617036|emb|CAA69914.1|
Ted2 [Vigna unguiculata]
Length = 324
Score = 38.9 bits (89), Expect = 0.046
Identities = 16/43 (37%), Positives = 30/43 (69%)
Frame = -2
Query: 570 ELLSWLARGMISVHISHSYPLSEANLAFGAIKDRKVIGKVMIV 442
EL + +A G++ V ++H+YPLSEA A +++RK G ++++
Sbjct: 281 ELFANVASGVLKVRVNHTYPLSEAAKAHEDLENRKTSGSIVLI 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,820,299
Number of Sequences: 1393205
Number of extensions: 9831646
Number of successful extensions: 19972
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 19579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19972
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
