Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001617A_C01 KMC001617A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK49947.1|AF335551_1 TGF-beta receptor-interacting protein 1... 155 3e-37
gb|AAG53616.1|AF285835_1 eukaryotic initiation factor 3I1 subuni... 143 1e-33
gb|AAK43862.1|AF370485_1 eukaryotic translation initiation facto... 143 1e-33
ref|NP_182151.1| eukaryotic translation initiation factor 3 delt... 143 1e-33
ref|NP_182152.1| eukaryotic translation initiation factor 3 delt... 142 3e-33
>gb|AAK49947.1|AF335551_1 TGF-beta receptor-interacting protein 1 [Phaseolus vulgaris]
Length = 326
Score = 155 bits (392), Expect = 3e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = -2
Query: 522 LTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG 343
LTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG
Sbjct: 223 LTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG 282
Query: 342 GVKGHFGPINALAFNP 295
GVKGHFGPINALAFNP
Sbjct: 283 GVKGHFGPINALAFNP 298
Score = 69.7 bits (169), Expect = 2e-11
Identities = 32/52 (61%), Positives = 38/52 (72%)
Frame = -3
Query: 365 RFFKKKLGV*KGISDRLMLWPLTPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 210
+ ++++G KG + PDGKSFSSGGEDGYVRLHHFDPDYFNIKI
Sbjct: 275 KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
>gb|AAG53616.1|AF285835_1 eukaryotic initiation factor 3I1 subunit [Arabidopsis thaliana]
Length = 328
Score = 143 bits (360), Expect = 1e-33
Identities = 69/76 (90%), Positives = 73/76 (95%)
Frame = -2
Query: 522 LTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG 343
LTL+KTY T PVNAV++SPLL+HVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG
Sbjct: 225 LTLLKTYTTVVPVNAVSLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG 284
Query: 342 GVKGHFGPINALAFNP 295
GVKGHFGPINALAFNP
Sbjct: 285 GVKGHFGPINALAFNP 300
Score = 66.6 bits (161), Expect = 2e-10
Identities = 31/52 (59%), Positives = 37/52 (70%)
Frame = -3
Query: 365 RFFKKKLGV*KGISDRLMLWPLTPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 210
+ ++++G KG + PDGKSFSSGGEDGYVRLHHFD DYFNIKI
Sbjct: 277 KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDSDYFNIKI 328
>gb|AAK43862.1|AF370485_1 eukaryotic translation initiation factor 3 delta subunit
[Arabidopsis thaliana] gi|17978705|gb|AAL47346.1|
eukaryotic translation initiation factor 3 delta subunit
[Arabidopsis thaliana]
Length = 328
Score = 143 bits (360), Expect = 1e-33
Identities = 69/76 (90%), Positives = 73/76 (95%)
Frame = -2
Query: 522 LTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG 343
LTL+KTY T PVNAV++SPLL+HVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG
Sbjct: 225 LTLLKTYTTVVPVNAVSLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG 284
Query: 342 GVKGHFGPINALAFNP 295
GVKGHFGPINALAFNP
Sbjct: 285 GVKGHFGPINALAFNP 300
Score = 65.1 bits (157), Expect = 5e-10
Identities = 30/52 (57%), Positives = 36/52 (68%)
Frame = -3
Query: 365 RFFKKKLGV*KGISDRLMLWPLTPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 210
+ ++++G KG + PDGK FSSGGEDGYVRLHHFD DYFNIKI
Sbjct: 277 KILQEEIGGVKGHFGPINALAFNPDGKGFSSGGEDGYVRLHHFDSDYFNIKI 328
>ref|NP_182151.1| eukaryotic translation initiation factor 3 delta subunit; protein
id: At2g46280.1, supported by cDNA: gi_1036802,
supported by cDNA: gi_12407663, supported by cDNA:
gi_13877568, supported by cDNA: gi_17978704 [Arabidopsis
thaliana] gi|23503072|sp|Q38884|IF32_ARATH Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) gi|25313265|pir||H84900 hypothetical
protein At2g46280 [imported] - Arabidopsis thaliana
gi|3702321|gb|AAC62878.1| eukaryotic translation
initiation factor 3 delta subunit [Arabidopsis thaliana]
Length = 328
Score = 143 bits (360), Expect = 1e-33
Identities = 69/76 (90%), Positives = 73/76 (95%)
Frame = -2
Query: 522 LTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG 343
LTL+KTY T PVNAV++SPLL+HVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG
Sbjct: 225 LTLLKTYTTVVPVNAVSLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG 284
Query: 342 GVKGHFGPINALAFNP 295
GVKGHFGPINALAFNP
Sbjct: 285 GVKGHFGPINALAFNP 300
Score = 66.6 bits (161), Expect = 2e-10
Identities = 31/52 (59%), Positives = 37/52 (70%)
Frame = -3
Query: 365 RFFKKKLGV*KGISDRLMLWPLTPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 210
+ ++++G KG + PDGKSFSSGGEDGYVRLHHFD DYFNIKI
Sbjct: 277 KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDSDYFNIKI 328
>ref|NP_182152.1| eukaryotic translation initiation factor 3 delta subunit; protein
id: At2g46290.1 [Arabidopsis thaliana]
gi|25313270|pir||A84901 hypothetical protein At2g46290
[imported] - Arabidopsis thaliana
gi|3702320|gb|AAC62877.1| eukaryotic translation
initiation factor 3 delta subunit [Arabidopsis thaliana]
Length = 328
Score = 142 bits (357), Expect = 3e-33
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = -2
Query: 522 LTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIG 343
LTLIKTY T PVNAVAMSPLL+HVVLGGGQDASAVTTTDHRAGKFEAKFYD ILQEEIG
Sbjct: 225 LTLIKTYTTVVPVNAVAMSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDTILQEEIG 284
Query: 342 GVKGHFGPINALAFNP 295
GVKGHFGPINALAF+P
Sbjct: 285 GVKGHFGPINALAFSP 300
Score = 64.3 bits (155), Expect = 8e-10
Identities = 30/49 (61%), Positives = 37/49 (75%)
Frame = -3
Query: 356 KKKLGV*KGISDRLMLWPLTPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 210
++++G KG + +PDGKSFSSGGEDGYVRLHHFD +YFNIKI
Sbjct: 280 QEEIGGVKGHFGPINALAFSPDGKSFSSGGEDGYVRLHHFDSNYFNIKI 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,892,422
Number of Sequences: 1393205
Number of extensions: 9485461
Number of successful extensions: 23246
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 22034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23232
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
